MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:114.4 nTPM
HPA Brain:247.5 nTPM
GTEx:114.4 nTPM
FANTOM5:72.2 Scaled Tags Per Million
Pig:144.7 nTPM
Mouse:76.9 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 247.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 166.3
2666 Male, age 74, left hemisphere 264.8
2586 Male, age 75, left hemisphere 241.5
1827 Male, age 72, unknown 183.1
2411 Female, age 72, unknown 166.5
2219 Male, age 76, both hemispheres 151.9
1870 Female, age 42, unknown 136.9
1833 Male, age 53, unknown 136.7
2828 Female, age 72, unknown 135.2
2019 Male, age 18, unknown 124.7
1830 Male, age 51, unknown 121.4
Dorsal raphe nucleus
nTPM: 213.5
2298 Female, age 72, unknown 291.7
2047 Male, age 72, unknown 250.1
1828 Male, age 53, unknown 207.1
2750 Male, age 76, both hemispheres 183.7
2016 Female, age 72, unknown 134.9
Inferior colliculus
nTPM: 156.5
2097 Female, age 72, unknown 184.8
1848 Female, age 42, unknown 159.3
2849 Male, age 72, unknown 159.2
1890 Male, age 53, unknown 122.7
Median raphe nucleus
nTPM: 247.5
2220 Male, age 76, midline 247.5
Periaquaductal grey, anterior
nTPM: 176.9
1947 Male, age 18, unknown 202.4
1795 Male, age 51, unknown 187.9
2502 Female, age 75, unknown 140.3
Periaquaductal grey, dorsal
nTPM: 151.9
1840 Male, age 53, unknown 196.5
2850 Male, age 76, both hemispheres 147.0
1831 Male, age 72, unknown 134.4
2464 Female, age 72, unknown 129.7
Periaquaductal grey, lateral
nTPM: 134.4
2272 Male, age 74, both hemispheres 139.4
2053 Male, age 18, unknown 137.2
2140 Male, age 76, both hemispheres 126.6
Pretectal area
nTPM: 172.4
2224 Female, age 72, unknown 246.4
1816 Male, age 51, unknown 212.9
2007 Male, age 72, unknown 189.4
1817 Female, age 42, unknown 180.8
1944 Female, age 72, unknown 177.2
2273 Male, age 74, both hemispheres 173.1
2667 Female, age 75, unknown 172.5
2825 Male, age 18, unknown 166.6
1815 Male, age 53, unknown 163.5
2407 Male, age 75, both hemispheres 114.1
2316 Male, age 76, right hemisphere 99.5
Red nucleus
nTPM: 90.7
2584 Male, age 75, left hemisphere 159.5
2785 Male, age 18, unknown 111.4
1821 Female, age 72, unknown 103.8
2725 Female, age 75, unknown 95.6
1954 Female, age 42, unknown 94.1
2227 Male, age 72, unknown 90.4
2769 Male, age 72, unknown 89.6
1904 Male, age 53, unknown 75.0
1865 Male, age 51, unknown 71.6
2588 Male, age 74, left hemisphere 70.0
2503 Female, age 72, unknown 65.5
2823 Male, age 76, right hemisphere 62.5
Substantia nigra
nTPM: 172.3
1916 Female, age 42, unknown 247.6
1851 Male, age 51, unknown 199.4
1941 Male, age 53, unknown 196.5
2241 Male, age 72, unknown 195.7
1889 Female, age 72, unknown 181.2
2665 Male, age 74, both hemispheres 178.6
2583 Male, age 75, right hemisphere 178.1
2409 Female, age 72, unknown 129.8
2699 Male, age 18, unknown 119.2
2590 Female, age 75, unknown 96.8
Superior colliculus
nTPM: 154.7
2668 Female, age 75, unknown 278.4
2664 Male, age 75, both hemispheres 181.0
2261 Male, age 18, unknown 175.7
1796 Male, age 53, unknown 172.0
2087 Female, age 72, unknown 160.9
1839 Male, age 51, unknown 156.9
1895 Male, age 76, right hemisphere 140.3
2587 Male, age 74, left hemisphere 110.8
1913 Female, age 42, unknown 89.0
1995 Male, age 72, unknown 81.8
Ventral tegmental area
nTPM: 180.9
1915 Female, age 42, unknown 204.3
2218 Male, age 76, both hemispheres 200.7
2410 Female, age 72, unknown 198.7
2021 Male, age 53, unknown 174.2
1942 Male, age 51, unknown 165.1
2223 Female, age 72, unknown 142.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 114.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.4
Samples: 139

Max nTPM: 451.0
Min nTPM: 12.5
Std nTPM: 72.9
Median nTPM: 88.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 451.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 364.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 351.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 282.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 273.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 265.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 238.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 235.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 229.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 223.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 221.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.2
FF:10158-103A5 76 years, female 72.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 144.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 144.7
Samples: 4

Max nTPM: 192.1
Min nTPM: 90.5
Sample A Female 192.1
Sample B Female 107.5
Sample C Male 188.6
Sample D Male 90.5
Midbrain
nTPM: 128.5
Samples: 4

Max nTPM: 147.2
Min nTPM: 117.8
Sample A Female 127.0
Sample B Female 117.8
Sample C Male 121.8
Sample D Male 147.2
Periaqueductal gray
nTPM: 140.8
Samples: 3

Max nTPM: 173.5
Min nTPM: 116.5
Sample B Female 116.5
Sample C Male 173.5
Sample D Male 132.3
Superior colliculi
nTPM: 123.2
Samples: 4

Max nTPM: 152.1
Min nTPM: 91.3
Sample A Female 152.1
Sample B Female 91.3
Sample C Male 111.6
Sample D Male 137.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 76.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.9
Samples: 4

Max nTPM: 80.6
Min nTPM: 71.1
Sample A Male 78.7
Sample B Male 71.1
Sample C Female 77.3
Sample D Female 80.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
68798085 Antisense, RP_050215_01_G03, Mouse strain C57BL/6J (56 days, male) 5.4

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