A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1045.5
nTPM
Monaco:
1592.1
nTPM
Schmiedel:
412.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1045.5
HPA sample
nTPM
Memory B-cell nTPM: 1045.5
Samples: 6
Max nTPM: 1303.5
Min nTPM: 875.5
P10809_1017
1069.7
P10809_1025
1117.7
P10809_1044
875.5
P10809_1063
893.8
P10809_1092
1013.0
P10809_1105
1303.5
Naive B-cell nTPM: 977.2
Samples: 6
Max nTPM: 1206.8
Min nTPM: 815.5
P10809_1011
1034.3
P10809_1029
1076.4
P10809_1048
880.7
P10809_1067
815.5
P10809_1091
849.4
P10809_1104
1206.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1592.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1129.4
Samples: 4
Max nTPM: 1800.7
Min nTPM: 847.0
RHH5310_R3677
1800.7
RHH5218_R3590
963.4
RHH5247_R3619
847.0
RHH5276_R3648
906.4
Naive B-cell nTPM: 1433.3
Samples: 4
Max nTPM: 2430.5
Min nTPM: 1093.4
RHH5308_R3675
2430.5
RHH5216_R3588
1105.0
RHH5245_R3617
1093.4
RHH5274_R3646
1104.3
Non-switched memory B-cell nTPM: 1344.1
Samples: 4
Max nTPM: 1970.6
Min nTPM: 939.2
RHH5309_R3676
1970.6
RHH5217_R3589
1403.7
RHH5246_R3618
1062.9
RHH5275_R3647
939.2
Plasmablast nTPM: 1339.1
Samples: 4
Max nTPM: 1436.9
Min nTPM: 1261.1
RHH5312_R3679
1436.9
RHH5220_R3592
1299.4
RHH5249_R3621
1359.0
RHH5278_R3650
1261.1
Switched memory B-cell nTPM: 1592.1
Samples: 4
Max nTPM: 2350.1
Min nTPM: 997.1
RHH5311_R3678
2350.1
RHH5219_R3591
1710.5
RHH5248_R3620
1310.8
RHH5277_R3649
997.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
412.6
Schmiedel sample id
TPM
Naive B-cell TPM: 412.6
Samples: 91
Max TPM: 535.9
Min TPM: 144.8
B_CELL_NAIVE_1
535.9
B_CELL_NAIVE_2
509.8
B_CELL_NAIVE_3
507.1
B_CELL_NAIVE_4
485.8
B_CELL_NAIVE_5
474.2
B_CELL_NAIVE_6
472.0
B_CELL_NAIVE_7
469.4
B_CELL_NAIVE_8
467.1
B_CELL_NAIVE_9
465.5
B_CELL_NAIVE_10
463.0
B_CELL_NAIVE_11
463.0
B_CELL_NAIVE_12
463.0
B_CELL_NAIVE_13
461.6
B_CELL_NAIVE_14
461.0
B_CELL_NAIVE_15
460.8
B_CELL_NAIVE_16
457.6
B_CELL_NAIVE_17
454.7
B_CELL_NAIVE_18
454.7
B_CELL_NAIVE_19
454.4
B_CELL_NAIVE_20
450.8
B_CELL_NAIVE_21
450.4
B_CELL_NAIVE_22
449.0
B_CELL_NAIVE_23
442.6
B_CELL_NAIVE_24
440.9
B_CELL_NAIVE_25
440.3
B_CELL_NAIVE_26
439.7
B_CELL_NAIVE_27
437.0
B_CELL_NAIVE_28
436.2
B_CELL_NAIVE_29
435.1
B_CELL_NAIVE_30
434.6
B_CELL_NAIVE_31
434.0
B_CELL_NAIVE_32
433.6
B_CELL_NAIVE_33
433.1
B_CELL_NAIVE_34
432.9
B_CELL_NAIVE_35
432.9
B_CELL_NAIVE_36
432.2
B_CELL_NAIVE_37
430.9
B_CELL_NAIVE_38
430.5
B_CELL_NAIVE_39
430.0
B_CELL_NAIVE_40
429.9
B_CELL_NAIVE_41
425.9
B_CELL_NAIVE_42
425.7
B_CELL_NAIVE_43
425.1
B_CELL_NAIVE_44
421.7
B_CELL_NAIVE_45
419.6
B_CELL_NAIVE_46
417.3
B_CELL_NAIVE_47
414.5
B_CELL_NAIVE_48
414.4
B_CELL_NAIVE_49
413.3
B_CELL_NAIVE_50
413.2
B_CELL_NAIVE_51
413.1
B_CELL_NAIVE_52
410.4
B_CELL_NAIVE_53
409.8
B_CELL_NAIVE_54
409.1
B_CELL_NAIVE_55
408.5
B_CELL_NAIVE_56
408.1
B_CELL_NAIVE_57
404.5
B_CELL_NAIVE_58
402.8
B_CELL_NAIVE_59
401.9
B_CELL_NAIVE_60
400.6
B_CELL_NAIVE_61
398.2
B_CELL_NAIVE_62
396.7
B_CELL_NAIVE_63
393.0
B_CELL_NAIVE_64
389.6
B_CELL_NAIVE_65
388.1
B_CELL_NAIVE_66
387.0
B_CELL_NAIVE_67
385.2
B_CELL_NAIVE_68
385.0
B_CELL_NAIVE_69
384.4
B_CELL_NAIVE_70
383.9
B_CELL_NAIVE_71
383.5
B_CELL_NAIVE_72
383.2
B_CELL_NAIVE_73
382.4
B_CELL_NAIVE_74
378.6
B_CELL_NAIVE_75
377.6
B_CELL_NAIVE_76
374.4
B_CELL_NAIVE_77
373.2
B_CELL_NAIVE_78
370.3
B_CELL_NAIVE_79
368.5
B_CELL_NAIVE_80
363.3
B_CELL_NAIVE_81
362.0
B_CELL_NAIVE_82
357.5
B_CELL_NAIVE_83
354.4
B_CELL_NAIVE_84
353.8
B_CELL_NAIVE_85
352.2
B_CELL_NAIVE_86
351.4
B_CELL_NAIVE_87
329.8
B_CELL_NAIVE_88
326.2
B_CELL_NAIVE_89
314.7
B_CELL_NAIVE_90
235.1
B_CELL_NAIVE_91
144.8
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