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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • RPSA
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:1045.5 nTPM
Monaco:1592.1 nTPM
Schmiedel:412.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1045.5
HPA sample nTPM
Memory B-cell
nTPM: 1045.5
Samples: 6

Max nTPM: 1303.5
Min nTPM: 875.5
P10809_1017 1069.7
P10809_1025 1117.7
P10809_1044 875.5
P10809_1063 893.8
P10809_1092 1013.0
P10809_1105 1303.5
Naive B-cell
nTPM: 977.2
Samples: 6

Max nTPM: 1206.8
Min nTPM: 815.5
P10809_1011 1034.3
P10809_1029 1076.4
P10809_1048 880.7
P10809_1067 815.5
P10809_1091 849.4
P10809_1104 1206.8

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1592.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1129.4
Samples: 4

Max nTPM: 1800.7
Min nTPM: 847.0
RHH5310_R3677 1800.7
RHH5218_R3590 963.4
RHH5247_R3619 847.0
RHH5276_R3648 906.4
Naive B-cell
nTPM: 1433.3
Samples: 4

Max nTPM: 2430.5
Min nTPM: 1093.4
RHH5308_R3675 2430.5
RHH5216_R3588 1105.0
RHH5245_R3617 1093.4
RHH5274_R3646 1104.3
Non-switched memory B-cell
nTPM: 1344.1
Samples: 4

Max nTPM: 1970.6
Min nTPM: 939.2
RHH5309_R3676 1970.6
RHH5217_R3589 1403.7
RHH5246_R3618 1062.9
RHH5275_R3647 939.2
Plasmablast
nTPM: 1339.1
Samples: 4

Max nTPM: 1436.9
Min nTPM: 1261.1
RHH5312_R3679 1436.9
RHH5220_R3592 1299.4
RHH5249_R3621 1359.0
RHH5278_R3650 1261.1
Switched memory B-cell
nTPM: 1592.1
Samples: 4

Max nTPM: 2350.1
Min nTPM: 997.1
RHH5311_R3678 2350.1
RHH5219_R3591 1710.5
RHH5248_R3620 1310.8
RHH5277_R3649 997.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

412.6
Schmiedel sample id TPM
Naive B-cell
TPM: 412.6
Samples: 91

Max TPM: 535.9
Min TPM: 144.8
B_CELL_NAIVE_1 535.9
B_CELL_NAIVE_2 509.8
B_CELL_NAIVE_3 507.1
B_CELL_NAIVE_4 485.8
B_CELL_NAIVE_5 474.2
B_CELL_NAIVE_6 472.0
B_CELL_NAIVE_7 469.4
B_CELL_NAIVE_8 467.1
B_CELL_NAIVE_9 465.5
B_CELL_NAIVE_10 463.0
B_CELL_NAIVE_11 463.0
B_CELL_NAIVE_12 463.0
B_CELL_NAIVE_13 461.6
B_CELL_NAIVE_14 461.0
B_CELL_NAIVE_15 460.8
B_CELL_NAIVE_16 457.6
B_CELL_NAIVE_17 454.7
B_CELL_NAIVE_18 454.7
B_CELL_NAIVE_19 454.4
B_CELL_NAIVE_20 450.8
B_CELL_NAIVE_21 450.4
B_CELL_NAIVE_22 449.0
B_CELL_NAIVE_23 442.6
B_CELL_NAIVE_24 440.9
B_CELL_NAIVE_25 440.3
B_CELL_NAIVE_26 439.7
B_CELL_NAIVE_27 437.0
B_CELL_NAIVE_28 436.2
B_CELL_NAIVE_29 435.1
B_CELL_NAIVE_30 434.6
B_CELL_NAIVE_31 434.0
B_CELL_NAIVE_32 433.6
B_CELL_NAIVE_33 433.1
B_CELL_NAIVE_34 432.9
B_CELL_NAIVE_35 432.9
B_CELL_NAIVE_36 432.2
B_CELL_NAIVE_37 430.9
B_CELL_NAIVE_38 430.5
B_CELL_NAIVE_39 430.0
B_CELL_NAIVE_40 429.9
B_CELL_NAIVE_41 425.9
B_CELL_NAIVE_42 425.7
B_CELL_NAIVE_43 425.1
B_CELL_NAIVE_44 421.7
B_CELL_NAIVE_45 419.6
B_CELL_NAIVE_46 417.3
B_CELL_NAIVE_47 414.5
B_CELL_NAIVE_48 414.4
B_CELL_NAIVE_49 413.3
B_CELL_NAIVE_50 413.2
B_CELL_NAIVE_51 413.1
B_CELL_NAIVE_52 410.4
B_CELL_NAIVE_53 409.8
B_CELL_NAIVE_54 409.1
B_CELL_NAIVE_55 408.5
B_CELL_NAIVE_56 408.1
B_CELL_NAIVE_57 404.5
B_CELL_NAIVE_58 402.8
B_CELL_NAIVE_59 401.9
B_CELL_NAIVE_60 400.6
B_CELL_NAIVE_61 398.2
B_CELL_NAIVE_62 396.7
B_CELL_NAIVE_63 393.0
B_CELL_NAIVE_64 389.6
B_CELL_NAIVE_65 388.1
B_CELL_NAIVE_66 387.0
B_CELL_NAIVE_67 385.2
B_CELL_NAIVE_68 385.0
B_CELL_NAIVE_69 384.4
B_CELL_NAIVE_70 383.9
B_CELL_NAIVE_71 383.5
B_CELL_NAIVE_72 383.2
B_CELL_NAIVE_73 382.4
B_CELL_NAIVE_74 378.6
B_CELL_NAIVE_75 377.6
B_CELL_NAIVE_76 374.4
B_CELL_NAIVE_77 373.2
B_CELL_NAIVE_78 370.3
B_CELL_NAIVE_79 368.5
B_CELL_NAIVE_80 363.3
B_CELL_NAIVE_81 362.0
B_CELL_NAIVE_82 357.5
B_CELL_NAIVE_83 354.4
B_CELL_NAIVE_84 353.8
B_CELL_NAIVE_85 352.2
B_CELL_NAIVE_86 351.4
B_CELL_NAIVE_87 329.8
B_CELL_NAIVE_88 326.2
B_CELL_NAIVE_89 314.7
B_CELL_NAIVE_90 235.1
B_CELL_NAIVE_91 144.8
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