A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
302.1
nTPM
Monaco:
591.8
nTPM
Schmiedel:
109.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
302.1
HPA sample
nTPM
Classical monocyte nTPM: 252.3
Samples: 6
Max nTPM: 354.5
Min nTPM: 145.3
P10809_1003
354.5
P10809_1020
273.4
P10809_1039
217.5
P10809_1058
194.5
P10809_1080
145.3
P10809_1107
328.3
Intermediate monocyte nTPM: 302.1
Samples: 6
Max nTPM: 502.8
Min nTPM: 199.0
P10809_1004
238.7
P10809_1023
381.8
P10809_1042
287.3
P10809_1061
203.0
P10809_1081
199.0
P10809_1108
502.8
Non-classical monocyte nTPM: 259.7
Samples: 5
Max nTPM: 362.6
Min nTPM: 172.1
P10809_1005
320.4
P10809_1053
235.4
P10809_1072
208.1
P10809_1082
172.1
P10809_1109
362.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
591.8
Monaco sample
nTPM
Classical monocyte nTPM: 441.1
Samples: 4
Max nTPM: 689.1
Min nTPM: 227.0
RHH5313_R3680
383.5
RHH5221_R3593
227.0
RHH5250_R3622
689.1
RHH5279_R3651
464.9
Intermediate monocyte nTPM: 591.8
Samples: 4
Max nTPM: 846.6
Min nTPM: 305.4
RHH5314_R3681
846.6
RHH5222_R3594
305.4
RHH5251_R3623
446.4
RHH5280_R3652
768.7
Non-classical monocyte nTPM: 373.1
Samples: 4
Max nTPM: 503.0
Min nTPM: 177.4
RHH5315_R3682
425.0
RHH5223_R3595
177.4
RHH5252_R3624
387.0
RHH5281_R3653
503.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.1
Schmiedel sample id
TPM
Classical monocyte TPM: 87.3
Samples: 91
Max TPM: 110.7
Min TPM: 58.1
MONOCYTES_1
110.7
MONOCYTES_2
109.6
MONOCYTES_3
109.2
MONOCYTES_4
107.1
MONOCYTES_5
107.1
MONOCYTES_6
106.2
MONOCYTES_7
105.2
MONOCYTES_8
104.5
MONOCYTES_9
104.4
MONOCYTES_10
102.9
MONOCYTES_11
102.8
MONOCYTES_12
100.9
MONOCYTES_13
100.6
MONOCYTES_14
98.6
MONOCYTES_15
98.4
MONOCYTES_16
97.5
MONOCYTES_17
95.4
MONOCYTES_18
95.1
MONOCYTES_19
94.6
MONOCYTES_20
94.5
MONOCYTES_21
94.2
MONOCYTES_22
94.0
MONOCYTES_23
93.9
MONOCYTES_24
93.6
MONOCYTES_25
93.6
MONOCYTES_26
93.6
MONOCYTES_27
93.5
MONOCYTES_28
93.2
MONOCYTES_29
92.7
MONOCYTES_30
91.7
MONOCYTES_31
91.5
MONOCYTES_32
91.0
MONOCYTES_33
91.0
MONOCYTES_34
90.7
MONOCYTES_35
90.0
MONOCYTES_36
89.9
MONOCYTES_37
89.8
MONOCYTES_38
89.5
MONOCYTES_39
88.7
MONOCYTES_40
87.9
MONOCYTES_41
87.8
MONOCYTES_42
87.8
MONOCYTES_43
87.7
MONOCYTES_44
87.7
MONOCYTES_45
87.0
MONOCYTES_46
86.9
MONOCYTES_47
85.3
MONOCYTES_48
85.1
MONOCYTES_49
85.1
MONOCYTES_50
84.5
MONOCYTES_51
84.4
MONOCYTES_52
84.0
MONOCYTES_53
83.8
MONOCYTES_54
83.6
MONOCYTES_55
83.5
MONOCYTES_56
83.5
MONOCYTES_57
83.4
MONOCYTES_58
83.2
MONOCYTES_59
83.2
MONOCYTES_60
83.1
MONOCYTES_61
82.7
MONOCYTES_62
82.5
MONOCYTES_63
81.5
MONOCYTES_64
81.5
MONOCYTES_65
81.2
MONOCYTES_66
81.1
MONOCYTES_67
80.7
MONOCYTES_68
80.6
MONOCYTES_69
80.5
MONOCYTES_70
80.4
MONOCYTES_71
80.3
MONOCYTES_72
79.7
MONOCYTES_73
79.4
MONOCYTES_74
79.1
MONOCYTES_75
78.9
MONOCYTES_76
78.3
MONOCYTES_77
77.7
MONOCYTES_78
76.0
MONOCYTES_79
75.2
MONOCYTES_80
75.1
MONOCYTES_81
73.9
MONOCYTES_82
73.8
MONOCYTES_83
73.7
MONOCYTES_84
73.3
MONOCYTES_85
72.6
MONOCYTES_86
71.8
MONOCYTES_87
70.7
MONOCYTES_88
70.6
MONOCYTES_89
68.5
MONOCYTES_90
65.7
MONOCYTES_91
58.1
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Non-classical monocyte TPM: 109.1
Samples: 90
Max TPM: 133.1
Min TPM: 81.6
M2_1
133.1
M2_2
129.6
M2_3
129.0
M2_4
128.6
M2_5
125.9
M2_6
125.5
M2_7
125.4
M2_8
125.1
M2_9
124.6
M2_10
123.2
M2_11
122.9
M2_12
121.4
M2_13
119.5
M2_14
119.3
M2_15
118.1
M2_16
117.8
M2_17
117.4
M2_18
116.7
M2_19
116.6
M2_20
116.4
M2_21
116.1
M2_22
115.9
M2_23
114.7
M2_24
113.8
M2_25
113.8
M2_26
113.7
M2_27
113.7
M2_28
113.7
M2_29
113.4
M2_30
112.9
M2_31
112.8
M2_32
112.7
M2_33
112.6
M2_34
111.5
M2_35
111.5
M2_36
111.1
M2_37
111.0
M2_38
111.0
M2_39
110.6
M2_40
110.4
M2_41
110.3
M2_42
110.1
M2_43
110.0
M2_44
109.5
M2_45
109.4
M2_46
109.2
M2_47
109.0
M2_48
108.8
M2_49
108.0
M2_50
107.8
M2_51
107.7
M2_52
107.5
M2_53
107.5
M2_54
107.3
M2_55
107.2
M2_56
107.2
M2_57
107.1
M2_58
107.1
M2_59
106.7
M2_60
106.7
M2_61
106.0
M2_62
104.5
M2_63
103.9
M2_64
103.6
M2_65
103.4
M2_66
102.8
M2_67
102.4
M2_68
102.4
M2_69
101.9
M2_70
100.5
M2_71
100.1
M2_72
99.8
M2_73
99.7
M2_74
99.5
M2_75
99.5
M2_76
99.2
M2_77
99.0
M2_78
99.0
M2_79
98.8
M2_80
98.7
M2_81
98.5
M2_82
97.1
M2_83
94.5
M2_84
93.9
M2_85
93.0
M2_86
89.9
M2_87
88.8
M2_88
88.8
M2_89
88.3
M2_90
81.6
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