A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
756.8
nTPM
Monaco:
462.6
nTPM
Schmiedel:
224.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
756.8
HPA sample
nTPM
NK-cell nTPM: 756.9
Samples: 6
Max nTPM: 867.6
Min nTPM: 626.3
P10809_1013
771.4
P10809_1033
792.2
P10809_1052
707.9
P10809_1071
775.7
P10809_1093
626.3
P10809_1103
867.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
462.6
Monaco sample
nTPM
NK-cell nTPM: 462.6
Samples: 4
Max nTPM: 617.1
Min nTPM: 329.8
RHH5316_R3683
617.1
RHH5224_R3596
455.9
RHH5253_R3625
329.8
RHH5282_R3654
447.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
224.3
Schmiedel sample id
TPM
NK-cell TPM: 224.3
Samples: 90
Max TPM: 282.7
Min TPM: 174.9
NK_1
282.7
NK_2
272.8
NK_3
267.9
NK_4
267.7
NK_5
266.1
NK_6
264.3
NK_7
263.9
NK_8
258.4
NK_9
257.9
NK_10
257.1
NK_11
256.0
NK_12
252.9
NK_13
250.2
NK_14
249.2
NK_15
247.7
NK_16
246.9
NK_17
244.6
NK_18
243.7
NK_19
242.7
NK_20
242.5
NK_21
242.4
NK_22
242.2
NK_23
241.1
NK_24
238.4
NK_25
237.8
NK_26
237.5
NK_27
237.3
NK_28
235.6
NK_29
234.6
NK_30
232.4
NK_31
232.0
NK_32
231.2
NK_33
230.9
NK_34
230.9
NK_35
230.7
NK_36
230.3
NK_37
228.9
NK_38
228.1
NK_39
228.1
NK_40
227.9
NK_41
227.4
NK_42
226.2
NK_43
226.2
NK_44
225.6
NK_45
224.9
NK_46
223.5
NK_47
223.4
NK_48
222.2
NK_49
221.9
NK_50
221.1
NK_51
219.6
NK_52
219.3
NK_53
219.0
NK_54
218.8
NK_55
218.8
NK_56
218.2
NK_57
218.0
NK_58
217.3
NK_59
217.0
NK_60
216.4
NK_61
215.8
NK_62
215.5
NK_63
214.5
NK_64
213.5
NK_65
210.1
NK_66
209.8
NK_67
207.5
NK_68
207.5
NK_69
207.1
NK_70
205.7
NK_71
205.0
NK_72
204.4
NK_73
200.6
NK_74
200.1
NK_75
198.9
NK_76
197.3
NK_77
194.4
NK_78
193.9
NK_79
193.3
NK_80
193.1
NK_81
192.9
NK_82
192.3
NK_83
189.2
NK_84
189.1
NK_85
187.1
NK_86
185.6
NK_87
185.2
NK_88
184.2
NK_89
182.0
NK_90
174.9
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