MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.8 nTPM
HPA Brain:46.8 nTPM
GTEx:73.8 nTPM
FANTOM5:116.3 Scaled Tags Per Million
Pig:60.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.0
2586 Male, age 75, left hemisphere 69.6
2019 Male, age 18, unknown 46.0
2828 Female, age 72, unknown 45.6
2666 Male, age 74, left hemisphere 44.5
1827 Male, age 72, unknown 40.0
2411 Female, age 72, unknown 39.9
1870 Female, age 42, unknown 37.5
1830 Male, age 51, unknown 32.5
2219 Male, age 76, both hemispheres 32.3
1833 Male, age 53, unknown 32.1
Dorsal raphe nucleus
nTPM: 46.6
2047 Male, age 72, unknown 57.5
2298 Female, age 72, unknown 50.3
2750 Male, age 76, both hemispheres 47.7
1828 Male, age 53, unknown 40.6
2016 Female, age 72, unknown 37.1
Inferior colliculus
nTPM: 42.1
2097 Female, age 72, unknown 54.6
1890 Male, age 53, unknown 46.0
2849 Male, age 72, unknown 34.4
1848 Female, age 42, unknown 33.4
Median raphe nucleus
nTPM: 45.4
2220 Male, age 76, midline 45.4
Periaquaductal grey, anterior
nTPM: 46.8
1795 Male, age 51, unknown 47.9
2502 Female, age 75, unknown 47.8
1947 Male, age 18, unknown 44.8
Periaquaductal grey, dorsal
nTPM: 31.7
1840 Male, age 53, unknown 36.5
2464 Female, age 72, unknown 33.8
2850 Male, age 76, both hemispheres 30.6
1831 Male, age 72, unknown 26.0
Periaquaductal grey, lateral
nTPM: 39.0
2140 Male, age 76, both hemispheres 44.0
2272 Male, age 74, both hemispheres 41.4
2053 Male, age 18, unknown 31.8
Pretectal area
nTPM: 43.3
2007 Male, age 72, unknown 61.1
1816 Male, age 51, unknown 48.3
1944 Female, age 72, unknown 48.1
2667 Female, age 75, unknown 46.4
1817 Female, age 42, unknown 44.8
2273 Male, age 74, both hemispheres 42.7
2224 Female, age 72, unknown 40.5
1815 Male, age 53, unknown 39.0
2316 Male, age 76, right hemisphere 37.1
2825 Male, age 18, unknown 36.7
2407 Male, age 75, both hemispheres 31.2
Red nucleus
nTPM: 36.4
2785 Male, age 18, unknown 47.7
2769 Male, age 72, unknown 42.7
2227 Male, age 72, unknown 41.3
2584 Male, age 75, left hemisphere 40.6
2588 Male, age 74, left hemisphere 39.2
2503 Female, age 72, unknown 37.7
1954 Female, age 42, unknown 34.9
1904 Male, age 53, unknown 33.8
2725 Female, age 75, unknown 32.4
1821 Female, age 72, unknown 31.4
1865 Male, age 51, unknown 29.4
2823 Male, age 76, right hemisphere 25.7
Substantia nigra
nTPM: 41.0
1916 Female, age 42, unknown 63.5
1941 Male, age 53, unknown 50.3
1889 Female, age 72, unknown 47.6
1851 Male, age 51, unknown 43.9
2583 Male, age 75, right hemisphere 43.5
2590 Female, age 75, unknown 36.4
2665 Male, age 74, both hemispheres 35.4
2699 Male, age 18, unknown 31.7
2241 Male, age 72, unknown 29.8
2409 Female, age 72, unknown 28.0
Superior colliculus
nTPM: 37.9
2261 Male, age 18, unknown 46.5
1796 Male, age 53, unknown 43.9
2668 Female, age 75, unknown 41.0
2087 Female, age 72, unknown 40.1
2587 Male, age 74, left hemisphere 39.2
2664 Male, age 75, both hemispheres 37.3
1839 Male, age 51, unknown 37.1
1913 Female, age 42, unknown 32.8
1895 Male, age 76, right hemisphere 30.6
1995 Male, age 72, unknown 30.2
Ventral tegmental area
nTPM: 42.2
1915 Female, age 42, unknown 53.7
1942 Male, age 51, unknown 50.5
2218 Male, age 76, both hemispheres 38.2
2223 Female, age 72, unknown 37.5
2021 Male, age 53, unknown 36.6
2410 Female, age 72, unknown 36.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.8
Samples: 183

Max nTPM: 158.1
Min nTPM: 30.9
Std nTPM: 22.2
Median nTPM: 67.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 158.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 140.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 136.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 125.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 125.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 124.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 124.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 122.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 122.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 116.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 113.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.3
FF:10158-103A5 76 years, female 116.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.6
Samples: 4

Max nTPM: 65.5
Min nTPM: 35.9
Sample A Female 65.5
Sample B Female 37.7
Sample C Male 51.3
Sample D Male 35.9
Midbrain
nTPM: 59.8
Samples: 4

Max nTPM: 70.2
Min nTPM: 47.4
Sample A Female 60.3
Sample B Female 47.4
Sample C Male 70.2
Sample D Male 61.2
Periaqueductal gray
nTPM: 50.4
Samples: 3

Max nTPM: 58.4
Min nTPM: 46.4
Sample B Female 46.4
Sample C Male 58.4
Sample D Male 46.5
Superior colliculi
nTPM: 60.8
Samples: 4

Max nTPM: 68.5
Min nTPM: 48.3
Sample A Female 68.5
Sample B Female 48.3
Sample C Male 67.7
Sample D Male 58.5

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