MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.9 nTPM
HPA Brain:123.2 nTPM
GTEx:79.9 nTPM
FANTOM5:207.8 Scaled Tags Per Million
Pig:143.3 nTPM
Mouse:204.7 nTPM
Allen mouse:21.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 123.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.0
2219 Male, age 76, both hemispheres 106.2
2019 Male, age 18, unknown 102.6
2411 Female, age 72, unknown 95.8
2666 Male, age 74, left hemisphere 94.8
1833 Male, age 53, unknown 92.3
1870 Female, age 42, unknown 91.4
1827 Male, age 72, unknown 88.4
1830 Male, age 51, unknown 86.7
2586 Male, age 75, left hemisphere 82.2
2828 Female, age 72, unknown 79.7
Dorsal raphe nucleus
nTPM: 102.7
2298 Female, age 72, unknown 120.1
2047 Male, age 72, unknown 113.5
1828 Male, age 53, unknown 100.7
2750 Male, age 76, both hemispheres 90.7
2016 Female, age 72, unknown 88.3
Inferior colliculus
nTPM: 94.9
2097 Female, age 72, unknown 102.0
2849 Male, age 72, unknown 96.2
1890 Male, age 53, unknown 94.9
1848 Female, age 42, unknown 86.3
Median raphe nucleus
nTPM: 123.2
2220 Male, age 76, midline 123.2
Periaquaductal grey, anterior
nTPM: 91.2
1795 Male, age 51, unknown 91.6
1947 Male, age 18, unknown 91.2
2502 Female, age 75, unknown 90.7
Periaquaductal grey, dorsal
nTPM: 90.4
2850 Male, age 76, both hemispheres 98.6
1840 Male, age 53, unknown 97.7
1831 Male, age 72, unknown 84.9
2464 Female, age 72, unknown 80.6
Periaquaductal grey, lateral
nTPM: 87.2
2272 Male, age 74, both hemispheres 90.7
2140 Male, age 76, both hemispheres 89.1
2053 Male, age 18, unknown 81.8
Pretectal area
nTPM: 103.1
1817 Female, age 42, unknown 117.4
1944 Female, age 72, unknown 115.7
1816 Male, age 51, unknown 113.0
2007 Male, age 72, unknown 110.4
2667 Female, age 75, unknown 108.6
1815 Male, age 53, unknown 104.0
2407 Male, age 75, both hemispheres 103.9
2224 Female, age 72, unknown 100.5
2273 Male, age 74, both hemispheres 91.0
2825 Male, age 18, unknown 89.6
2316 Male, age 76, right hemisphere 79.9
Red nucleus
nTPM: 86.1
1821 Female, age 72, unknown 95.9
2725 Female, age 75, unknown 95.4
2785 Male, age 18, unknown 95.4
2584 Male, age 75, left hemisphere 94.4
1954 Female, age 42, unknown 88.3
1865 Male, age 51, unknown 85.8
1904 Male, age 53, unknown 83.9
2503 Female, age 72, unknown 82.5
2769 Male, age 72, unknown 82.5
2227 Male, age 72, unknown 80.6
2588 Male, age 74, left hemisphere 74.7
2823 Male, age 76, right hemisphere 73.6
Substantia nigra
nTPM: 113.2
1916 Female, age 42, unknown 147.2
2241 Male, age 72, unknown 134.1
2409 Female, age 72, unknown 125.9
1851 Male, age 51, unknown 119.4
1941 Male, age 53, unknown 113.3
1889 Female, age 72, unknown 110.3
2699 Male, age 18, unknown 107.9
2665 Male, age 74, both hemispheres 101.1
2583 Male, age 75, right hemisphere 91.0
2590 Female, age 75, unknown 81.5
Superior colliculus
nTPM: 88.9
2668 Female, age 75, unknown 103.4
2087 Female, age 72, unknown 101.9
1796 Male, age 53, unknown 92.1
2587 Male, age 74, left hemisphere 90.7
2261 Male, age 18, unknown 89.6
1895 Male, age 76, right hemisphere 88.1
1839 Male, age 51, unknown 87.6
1913 Female, age 42, unknown 84.3
2664 Male, age 75, both hemispheres 78.3
1995 Male, age 72, unknown 73.4
Ventral tegmental area
nTPM: 100.2
2410 Female, age 72, unknown 114.3
1915 Female, age 42, unknown 109.9
2218 Male, age 76, both hemispheres 102.8
2223 Female, age 72, unknown 96.7
1942 Male, age 51, unknown 89.8
2021 Male, age 53, unknown 87.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 79.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.9
Samples: 183

Max nTPM: 471.3
Min nTPM: 35.2
Std nTPM: 50.3
Median nTPM: 67.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 471.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 348.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 266.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 240.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 231.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 213.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 202.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 178.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 158.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 156.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 155.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 207.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 207.8
FF:10158-103A5 76 years, female 207.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 143.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 127.7
Samples: 4

Max nTPM: 165.3
Min nTPM: 97.8
Sample A Female 165.3
Sample B Female 97.8
Sample C Male 146.3
Sample D Male 101.4
Midbrain
nTPM: 126.5
Samples: 4

Max nTPM: 146.3
Min nTPM: 107.3
Sample A Female 146.3
Sample B Female 107.3
Sample C Male 130.8
Sample D Male 121.7
Periaqueductal gray
nTPM: 106.3
Samples: 3

Max nTPM: 118.6
Min nTPM: 98.2
Sample B Female 102.2
Sample C Male 118.6
Sample D Male 98.2
Superior colliculi
nTPM: 143.3
Samples: 4

Max nTPM: 164.5
Min nTPM: 125.7
Sample A Female 164.5
Sample B Female 127.2
Sample C Male 155.9
Sample D Male 125.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 204.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 204.7
Samples: 4

Max nTPM: 213.8
Min nTPM: 194.5
Sample A Male 194.5
Sample B Male 200.2
Sample C Female 213.8
Sample D Female 210.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.0
413807 Antisense, RP_040809_01_F06, Mouse strain C57BL/6J (56 days, male) 21.0

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