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  • LDLRAD4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:17.1 nTPM
HPA Brain:80.8 nTPM
GTEx:17.1 nTPM
FANTOM5:39.8 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:17.0 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.8
Sample id Sample description nTPM
Amygdala
nTPM: 76.3
2695 Female, age 67, right hemisphere 86.7
2814 Male, age 76, right hemisphere 80.4
2517 Female, age 94, left hemisphere 79.4
2514 Male, age 75, right hemisphere 71.3
1987 Female, age 91, left hemisphere 63.8
Basal amygdala
nTPM: 73.5
2827 Female, age 67, right hemisphere 81.3
2685 Female, age 94, left hemisphere 77.1
2609 Male, age 75, right hemisphere 75.7
2243 Female, age 91, right hemisphere 74.3
1955 Male, age 76, both hemispheres 66.6
2110 Male, age 80, left hemisphere 66.2
Central amygdala
nTPM: 77.9
2826 Female, age 94, left hemisphere 93.7
1905 Male, age 76, both hemispheres 81.6
2701 Female, age 91, right hemisphere 76.1
2515 Male, age 75, right hemisphere 70.9
2239 Male, age 80, left hemisphere 67.4
Corticomedial amygdala
nTPM: 66.4
2535 Female, age 67, right hemisphere 81.2
2428 Male, age 75, right hemisphere 73.0
2429 Female, age 94, left hemisphere 63.3
2240 Male, age 76, both hemispheres 62.8
2829 Male, age 80, left hemisphere 59.3
2242 Female, age 91, right hemisphere 58.5
Lateral amygdala
nTPM: 80.8
2256 Male, age 80, left hemisphere 90.8
2830 Female, age 67, right hemisphere 81.1
1883 Male, age 76, both hemispheres 80.3
2534 Female, age 94, left hemisphere 80.3
2516 Male, age 75, right hemisphere 78.3
2255 Female, age 91, right hemisphere 74.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 17.1
Samples: 181

Max nTPM: 55.4
Min nTPM: 3.7
Std nTPM: 8.0
Median nTPM: 15.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 55.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 37.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 37.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 37.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 36.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 36.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 35.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 34.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 33.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 33.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 32.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 31.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 31.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 30.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 30.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 30.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 29.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 29.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 28.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 28.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 27.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 27.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 26.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 26.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 25.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 25.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 25.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 25.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 24.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 24.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 24.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 23.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 23.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 23.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 23.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 23.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 22.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 22.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 22.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 22.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 22.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 21.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 21.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 21.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 21.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 21.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 21.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 21.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 20.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 20.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 20.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 20.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 20.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 20.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 20.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 20.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 19.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 19.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 19.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 18.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 18.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 18.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 18.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 17.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 17.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 17.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 17.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 17.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 17.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 17.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 17.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 17.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 17.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 17.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 16.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 16.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 16.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 16.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 16.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 16.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 16.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 16.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 16.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 16.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 16.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 15.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 15.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 15.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 15.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 15.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 15.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 15.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 15.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 15.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 14.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 14.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 14.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 14.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 14.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 14.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 14.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 14.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 13.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 13.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 13.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 13.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 13.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 13.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 13.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 13.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 13.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 13.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 13.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 13.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 13.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 13.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 12.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 12.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 12.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 12.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 12.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 12.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 12.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 12.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 12.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 12.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 12.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 12.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 12.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 12.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 12.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 12.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 11.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 11.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 11.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 11.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 11.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 11.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 11.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 11.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 11.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 11.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 10.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 10.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 10.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 10.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 10.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 10.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 10.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 10.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 10.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 9.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 9.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 9.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 9.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 9.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 8.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 8.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 8.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 8.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 8.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 8.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 8.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 8.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 8.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 7.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 7.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 7.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 7.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 7.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 7.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 7.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 7.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 6.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 6.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 6.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 6.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 5.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 4.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 39.8
FF:10151-102I7 76 years, female 39.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.4
Pig sample Sample description nTPM
Amygdala
nTPM: 14.4
Samples: 4

Max nTPM: 16.3
Min nTPM: 11.0
Sample A Female 16.3
Sample B Female 11.0
Sample C Male 14.9
Sample D Male 15.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.0
Samples: 4

Max nTPM: 21.7
Min nTPM: 14.9
Sample A Male 16.3
Sample B Male 15.0
Sample C Female 21.7
Sample D Female 14.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
70238633 Antisense, RP_050526_03_E12, Mouse strain C57BL/6J (56 days, male) 0.8
73817443 Antisense, RP_051101_01_B07, Mouse strain C57BL/6J (56 days, male) 0.0

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