A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
253.1
nTPM
Monaco:
70.1
nTPM
Schmiedel:
33.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
253.1
HPA sample
nTPM
Memory B-cell nTPM: 253.0
Samples: 6
Max nTPM: 486.7
Min nTPM: 115.5
P10809_1017
115.5
P10809_1025
273.4
P10809_1044
486.7
P10809_1063
211.4
P10809_1092
230.7
P10809_1105
200.6
Naive B-cell nTPM: 216.0
Samples: 6
Max nTPM: 426.8
Min nTPM: 98.8
P10809_1011
98.8
P10809_1029
214.0
P10809_1048
426.8
P10809_1067
157.8
P10809_1091
199.5
P10809_1104
198.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 49.6
Samples: 4
Max nTPM: 74.8
Min nTPM: 27.7
RHH5310_R3677
50.4
RHH5218_R3590
27.7
RHH5247_R3619
74.8
RHH5276_R3648
45.5
Naive B-cell nTPM: 40.3
Samples: 4
Max nTPM: 51.4
Min nTPM: 26.8
RHH5308_R3675
51.4
RHH5216_R3588
37.8
RHH5245_R3617
26.8
RHH5274_R3646
45.2
Non-switched memory B-cell nTPM: 46.3
Samples: 4
Max nTPM: 64.6
Min nTPM: 28.6
RHH5309_R3676
64.6
RHH5217_R3589
28.6
RHH5246_R3618
47.7
RHH5275_R3647
44.5
Plasmablast nTPM: 70.2
Samples: 4
Max nTPM: 92.2
Min nTPM: 43.7
RHH5312_R3679
92.2
RHH5220_R3592
43.7
RHH5249_R3621
60.0
RHH5278_R3650
84.7
Switched memory B-cell nTPM: 36.2
Samples: 4
Max nTPM: 50.2
Min nTPM: 18.4
RHH5311_R3678
50.2
RHH5219_R3591
38.0
RHH5248_R3620
18.4
RHH5277_R3649
38.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.2
Schmiedel sample id
TPM
Naive B-cell TPM: 33.2
Samples: 91
Max TPM: 52.1
Min TPM: 12.8
B_CELL_NAIVE_1
52.1
B_CELL_NAIVE_2
48.1
B_CELL_NAIVE_3
47.3
B_CELL_NAIVE_4
46.0
B_CELL_NAIVE_5
45.0
B_CELL_NAIVE_6
44.2
B_CELL_NAIVE_7
43.8
B_CELL_NAIVE_8
43.2
B_CELL_NAIVE_9
43.0
B_CELL_NAIVE_10
42.9
B_CELL_NAIVE_11
42.8
B_CELL_NAIVE_12
42.6
B_CELL_NAIVE_13
42.4
B_CELL_NAIVE_14
41.6
B_CELL_NAIVE_15
41.2
B_CELL_NAIVE_16
41.2
B_CELL_NAIVE_17
41.2
B_CELL_NAIVE_18
41.0
B_CELL_NAIVE_19
40.7
B_CELL_NAIVE_20
39.8
B_CELL_NAIVE_21
39.7
B_CELL_NAIVE_22
39.4
B_CELL_NAIVE_23
39.0
B_CELL_NAIVE_24
38.6
B_CELL_NAIVE_25
38.6
B_CELL_NAIVE_26
38.6
B_CELL_NAIVE_27
37.9
B_CELL_NAIVE_28
37.9
B_CELL_NAIVE_29
37.8
B_CELL_NAIVE_30
37.8
B_CELL_NAIVE_31
37.7
B_CELL_NAIVE_32
37.4
B_CELL_NAIVE_33
37.3
B_CELL_NAIVE_34
37.0
B_CELL_NAIVE_35
37.0
B_CELL_NAIVE_36
36.8
B_CELL_NAIVE_37
36.7
B_CELL_NAIVE_38
36.5
B_CELL_NAIVE_39
36.5
B_CELL_NAIVE_40
36.0
B_CELL_NAIVE_41
35.8
B_CELL_NAIVE_42
35.8
B_CELL_NAIVE_43
35.5
B_CELL_NAIVE_44
35.4
B_CELL_NAIVE_45
33.9
B_CELL_NAIVE_46
33.8
B_CELL_NAIVE_47
33.7
B_CELL_NAIVE_48
33.6
B_CELL_NAIVE_49
33.5
B_CELL_NAIVE_50
33.5
B_CELL_NAIVE_51
33.3
B_CELL_NAIVE_52
33.1
B_CELL_NAIVE_53
32.8
B_CELL_NAIVE_54
32.2
B_CELL_NAIVE_55
32.0
B_CELL_NAIVE_56
31.7
B_CELL_NAIVE_57
31.7
B_CELL_NAIVE_58
31.5
B_CELL_NAIVE_59
31.2
B_CELL_NAIVE_60
31.2
B_CELL_NAIVE_61
30.9
B_CELL_NAIVE_62
30.9
B_CELL_NAIVE_63
30.7
B_CELL_NAIVE_64
30.2
B_CELL_NAIVE_65
30.2
B_CELL_NAIVE_66
29.2
B_CELL_NAIVE_67
28.8
B_CELL_NAIVE_68
28.5
B_CELL_NAIVE_69
28.2
B_CELL_NAIVE_70
27.7
B_CELL_NAIVE_71
27.7
B_CELL_NAIVE_72
27.4
B_CELL_NAIVE_73
26.2
B_CELL_NAIVE_74
25.8
B_CELL_NAIVE_75
25.5
B_CELL_NAIVE_76
25.0
B_CELL_NAIVE_77
23.7
B_CELL_NAIVE_78
22.7
B_CELL_NAIVE_79
21.9
B_CELL_NAIVE_80
21.4
B_CELL_NAIVE_81
21.0
B_CELL_NAIVE_82
20.6
B_CELL_NAIVE_83
20.2
B_CELL_NAIVE_84
19.6
B_CELL_NAIVE_85
18.8
B_CELL_NAIVE_86
17.6
B_CELL_NAIVE_87
15.0
B_CELL_NAIVE_88
14.5
B_CELL_NAIVE_89
14.3
B_CELL_NAIVE_90
13.9
B_CELL_NAIVE_91
12.8
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