A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
419.8
nTPM
Monaco:
56.7
nTPM
Schmiedel:
95.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
419.8
HPA sample
nTPM
Classical monocyte nTPM: 419.8
Samples: 6
Max nTPM: 641.5
Min nTPM: 253.4
P10809_1003
253.4
P10809_1020
400.5
P10809_1039
641.5
P10809_1058
354.4
P10809_1080
364.6
P10809_1107
504.4
Intermediate monocyte nTPM: 326.5
Samples: 6
Max nTPM: 505.1
Min nTPM: 194.1
P10809_1004
194.1
P10809_1023
371.5
P10809_1042
339.5
P10809_1061
250.6
P10809_1081
298.2
P10809_1108
505.1
Non-classical monocyte nTPM: 255.9
Samples: 5
Max nTPM: 421.4
Min nTPM: 87.0
P10809_1005
197.1
P10809_1053
290.2
P10809_1072
87.0
P10809_1082
283.6
P10809_1109
421.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.7
Monaco sample
nTPM
Classical monocyte nTPM: 47.8
Samples: 4
Max nTPM: 68.9
Min nTPM: 26.6
RHH5313_R3680
68.9
RHH5221_R3593
29.0
RHH5250_R3622
26.6
RHH5279_R3651
66.6
Intermediate monocyte nTPM: 56.7
Samples: 4
Max nTPM: 67.7
Min nTPM: 44.5
RHH5314_R3681
65.2
RHH5222_R3594
67.7
RHH5251_R3623
44.5
RHH5280_R3652
49.5
Non-classical monocyte nTPM: 44.7
Samples: 4
Max nTPM: 65.0
Min nTPM: 33.6
RHH5315_R3682
65.0
RHH5223_R3595
34.0
RHH5252_R3624
33.6
RHH5281_R3653
46.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.3
Schmiedel sample id
TPM
Classical monocyte TPM: 92.0
Samples: 91
Max TPM: 159.2
Min TPM: 67.5
MONOCYTES_1
159.2
MONOCYTES_2
111.1
MONOCYTES_3
109.1
MONOCYTES_4
108.7
MONOCYTES_5
108.7
MONOCYTES_6
107.3
MONOCYTES_7
107.1
MONOCYTES_8
106.1
MONOCYTES_9
105.8
MONOCYTES_10
105.6
MONOCYTES_11
105.3
MONOCYTES_12
105.2
MONOCYTES_13
103.0
MONOCYTES_14
102.2
MONOCYTES_15
101.4
MONOCYTES_16
100.6
MONOCYTES_17
100.3
MONOCYTES_18
100.1
MONOCYTES_19
99.7
MONOCYTES_20
98.7
MONOCYTES_21
98.0
MONOCYTES_22
98.0
MONOCYTES_23
97.7
MONOCYTES_24
97.0
MONOCYTES_25
96.9
MONOCYTES_26
96.6
MONOCYTES_27
96.4
MONOCYTES_28
96.2
MONOCYTES_29
96.1
MONOCYTES_30
95.9
MONOCYTES_31
95.8
MONOCYTES_32
95.5
MONOCYTES_33
95.3
MONOCYTES_34
94.5
MONOCYTES_35
94.4
MONOCYTES_36
93.9
MONOCYTES_37
93.7
MONOCYTES_38
93.6
MONOCYTES_39
93.0
MONOCYTES_40
92.9
MONOCYTES_41
92.8
MONOCYTES_42
92.8
MONOCYTES_43
92.6
MONOCYTES_44
92.6
MONOCYTES_45
92.5
MONOCYTES_46
92.1
MONOCYTES_47
91.7
MONOCYTES_48
91.6
MONOCYTES_49
91.6
MONOCYTES_50
91.0
MONOCYTES_51
91.0
MONOCYTES_52
90.9
MONOCYTES_53
90.6
MONOCYTES_54
90.5
MONOCYTES_55
90.4
MONOCYTES_56
90.2
MONOCYTES_57
89.8
MONOCYTES_58
89.7
MONOCYTES_59
89.4
MONOCYTES_60
88.9
MONOCYTES_61
88.5
MONOCYTES_62
88.3
MONOCYTES_63
87.4
MONOCYTES_64
87.3
MONOCYTES_65
87.2
MONOCYTES_66
87.0
MONOCYTES_67
86.6
MONOCYTES_68
85.5
MONOCYTES_69
84.8
MONOCYTES_70
84.6
MONOCYTES_71
83.7
MONOCYTES_72
83.7
MONOCYTES_73
83.6
MONOCYTES_74
82.8
MONOCYTES_75
82.2
MONOCYTES_76
81.1
MONOCYTES_77
80.8
MONOCYTES_78
79.6
MONOCYTES_79
78.8
MONOCYTES_80
78.7
MONOCYTES_81
78.6
MONOCYTES_82
78.2
MONOCYTES_83
77.1
MONOCYTES_84
77.0
MONOCYTES_85
76.6
MONOCYTES_86
75.7
MONOCYTES_87
74.9
MONOCYTES_88
72.7
MONOCYTES_89
68.7
MONOCYTES_90
67.6
MONOCYTES_91
67.5
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Non-classical monocyte TPM: 95.3
Samples: 90
Max TPM: 136.0
Min TPM: 45.3
M2_1
136.0
M2_2
133.5
M2_3
122.1
M2_4
122.1
M2_5
120.6
M2_6
119.8
M2_7
117.8
M2_8
117.1
M2_9
115.1
M2_10
112.8
M2_11
111.6
M2_12
110.9
M2_13
110.1
M2_14
110.0
M2_15
108.7
M2_16
108.7
M2_17
108.6
M2_18
107.5
M2_19
107.5
M2_20
107.2
M2_21
107.2
M2_22
107.0
M2_23
107.0
M2_24
106.4
M2_25
106.3
M2_26
105.1
M2_27
103.9
M2_28
102.8
M2_29
102.6
M2_30
102.1
M2_31
101.7
M2_32
101.6
M2_33
101.1
M2_34
101.0
M2_35
100.6
M2_36
100.6
M2_37
100.5
M2_38
100.5
M2_39
100.2
M2_40
99.9
M2_41
99.1
M2_42
97.9
M2_43
97.8
M2_44
97.0
M2_45
96.7
M2_46
96.6
M2_47
95.9
M2_48
95.8
M2_49
95.6
M2_50
94.7
M2_51
93.8
M2_52
93.7
M2_53
92.9
M2_54
92.5
M2_55
92.3
M2_56
91.7
M2_57
91.1
M2_58
91.1
M2_59
91.1
M2_60
90.5
M2_61
90.1
M2_62
90.0
M2_63
90.0
M2_64
89.3
M2_65
87.9
M2_66
87.4
M2_67
87.2
M2_68
87.0
M2_69
84.3
M2_70
84.2
M2_71
84.2
M2_72
83.4
M2_73
83.4
M2_74
83.3
M2_75
83.3
M2_76
82.9
M2_77
82.2
M2_78
81.6
M2_79
77.9
M2_80
76.9
M2_81
76.4
M2_82
71.0
M2_83
71.0
M2_84
67.9
M2_85
66.7
M2_86
62.5
M2_87
57.1
M2_88
55.5
M2_89
50.9
M2_90
45.3
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