A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
196.1
nTPM
Monaco:
52.0
nTPM
Schmiedel:
94.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
196.1
HPA sample
nTPM
NK-cell nTPM: 196.0
Samples: 6
Max nTPM: 290.0
Min nTPM: 79.0
P10809_1013
79.0
P10809_1033
290.0
P10809_1052
202.9
P10809_1071
254.1
P10809_1093
155.9
P10809_1103
194.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.0
Monaco sample
nTPM
NK-cell nTPM: 52.0
Samples: 4
Max nTPM: 66.9
Min nTPM: 38.0
RHH5316_R3683
66.9
RHH5224_R3596
38.0
RHH5253_R3625
41.6
RHH5282_R3654
61.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.6
Schmiedel sample id
TPM
NK-cell TPM: 94.6
Samples: 90
Max TPM: 138.5
Min TPM: 48.9
NK_1
138.5
NK_2
121.4
NK_3
120.2
NK_4
119.7
NK_5
119.5
NK_6
118.6
NK_7
116.4
NK_8
116.2
NK_9
114.9
NK_10
114.7
NK_11
114.2
NK_12
113.9
NK_13
113.5
NK_14
112.5
NK_15
111.7
NK_16
111.6
NK_17
109.9
NK_18
109.3
NK_19
109.1
NK_20
108.8
NK_21
107.5
NK_22
106.1
NK_23
106.0
NK_24
105.6
NK_25
105.2
NK_26
104.9
NK_27
104.9
NK_28
104.0
NK_29
103.9
NK_30
102.9
NK_31
102.6
NK_32
102.0
NK_33
101.8
NK_34
101.0
NK_35
100.9
NK_36
100.8
NK_37
100.6
NK_38
100.5
NK_39
100.1
NK_40
100.1
NK_41
99.0
NK_42
96.7
NK_43
96.2
NK_44
96.1
NK_45
96.0
NK_46
95.9
NK_47
95.9
NK_48
95.6
NK_49
94.9
NK_50
94.2
NK_51
94.0
NK_52
93.7
NK_53
92.4
NK_54
92.1
NK_55
92.0
NK_56
91.9
NK_57
91.9
NK_58
91.3
NK_59
90.1
NK_60
90.1
NK_61
89.6
NK_62
89.1
NK_63
88.1
NK_64
87.7
NK_65
87.5
NK_66
86.8
NK_67
84.4
NK_68
84.3
NK_69
84.1
NK_70
84.0
NK_71
83.9
NK_72
83.3
NK_73
83.2
NK_74
82.6
NK_75
80.8
NK_76
80.6
NK_77
79.5
NK_78
73.8
NK_79
71.6
NK_80
70.3
NK_81
69.6
NK_82
68.8
NK_83
67.1
NK_84
65.3
NK_85
63.2
NK_86
60.6
NK_87
59.4
NK_88
53.5
NK_89
49.1
NK_90
48.9
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