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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:116.0 nTPM
HPA Brain:174.7 nTPM
GTEx:116.0 nTPM
FANTOM5:243.6 Scaled Tags Per Million
Pig:134.5 nTPM
Mouse:93.6 nTPM
Allen mouse:6.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.7
Sample id Sample description nTPM
Amygdala
nTPM: 174.7
2814 Male, age 76, right hemisphere 203.4
2695 Female, age 67, right hemisphere 180.7
2514 Male, age 75, right hemisphere 173.2
2517 Female, age 94, left hemisphere 158.9
1987 Female, age 91, left hemisphere 157.2
Basal amygdala
nTPM: 151.4
2685 Female, age 94, left hemisphere 170.0
2110 Male, age 80, left hemisphere 162.9
1955 Male, age 76, both hemispheres 153.3
2609 Male, age 75, right hemisphere 153.1
2243 Female, age 91, right hemisphere 137.4
2827 Female, age 67, right hemisphere 131.6
Central amygdala
nTPM: 150.6
1905 Male, age 76, both hemispheres 183.6
2701 Female, age 91, right hemisphere 181.9
2239 Male, age 80, left hemisphere 151.4
2515 Male, age 75, right hemisphere 139.6
2826 Female, age 94, left hemisphere 96.5
Corticomedial amygdala
nTPM: 143.4
2429 Female, age 94, left hemisphere 164.6
2428 Male, age 75, right hemisphere 156.1
2829 Male, age 80, left hemisphere 145.6
2240 Male, age 76, both hemispheres 144.0
2242 Female, age 91, right hemisphere 133.1
2535 Female, age 67, right hemisphere 116.9
Lateral amygdala
nTPM: 155.4
2516 Male, age 75, right hemisphere 178.9
1883 Male, age 76, both hemispheres 166.9
2256 Male, age 80, left hemisphere 162.9
2255 Female, age 91, right hemisphere 160.7
2830 Female, age 67, right hemisphere 138.3
2534 Female, age 94, left hemisphere 124.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 116.0
Samples: 181

Max nTPM: 229.1
Min nTPM: 34.1
Std nTPM: 33.6
Median nTPM: 111.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 229.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 218.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 213.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 197.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 195.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 193.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 191.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 189.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 185.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 179.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 178.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 171.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 169.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 166.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 162.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 162.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 162.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 162.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 158.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 156.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 155.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 154.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 154.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 154.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 153.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 153.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 152.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 151.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 149.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 148.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 148.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 147.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 146.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 143.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 143.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 141.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 140.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 140.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 140.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 138.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 137.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 137.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 137.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 135.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 132.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 131.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 131.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 130.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 130.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 129.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 129.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 128.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 128.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 127.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 127.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 126.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 125.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 125.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 125.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 124.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 124.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 123.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 123.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 123.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 123.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 122.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 122.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 120.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 120.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 120.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 119.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 118.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 118.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 118.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 117.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 117.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 117.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 117.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 117.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 116.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 115.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 114.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 114.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 113.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 113.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 113.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 113.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 113.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 111.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 110.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 110.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 110.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 110.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 109.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 109.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 108.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 108.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 107.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 107.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 107.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 107.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 106.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 105.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 105.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 105.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 104.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 104.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 103.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 103.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 103.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 103.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 103.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 103.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 103.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 102.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 102.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 101.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 100.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 100.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 100.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 99.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 99.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 98.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 96.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 96.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 95.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 95.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 94.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 94.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 94.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 94.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 93.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 93.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 93.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 92.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 90.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 90.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 87.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 86.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 86.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 85.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 83.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 83.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 82.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 81.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 81.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 80.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 79.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 77.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 77.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 76.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 75.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 74.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 74.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 73.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 73.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 71.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 68.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 68.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 67.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 64.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 63.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 63.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 62.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 61.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 59.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 58.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 58.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 34.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

243.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 243.6
FF:10151-102I7 76 years, female 243.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.5
Pig sample Sample description nTPM
Amygdala
nTPM: 134.5
Samples: 4

Max nTPM: 149.1
Min nTPM: 123.8
Sample A Female 124.4
Sample B Female 149.1
Sample C Male 140.7
Sample D Male 123.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 93.5
Samples: 4

Max nTPM: 100.1
Min nTPM: 84.8
Sample A Male 84.8
Sample B Male 100.1
Sample C Female 94.6
Sample D Female 94.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.5
67978473 Antisense, RP_040923_01_B10, Mouse strain C57BL/6J (56 days, male) 13.1
71991953 Antisense, RP_051012_03_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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