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  • SUMMARY

  • TISSUE

  • BRAIN

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  • MAT2A
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:147.3 nTPM
HPA Brain:251.4 nTPM
GTEx:147.3 nTPM
FANTOM5:486.4 Scaled Tags Per Million
Pig:175.2 nTPM
Mouse:144.0 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 188.6
2411 Female, age 72, unknown 224.2
1833 Male, age 53, unknown 214.9
2828 Female, age 72, unknown 212.4
1830 Male, age 51, unknown 208.9
1870 Female, age 42, unknown 203.2
1827 Male, age 72, unknown 195.9
2019 Male, age 18, unknown 184.5
2666 Male, age 74, left hemisphere 168.1
2219 Male, age 76, both hemispheres 156.3
2586 Male, age 75, left hemisphere 118.0
Dorsal raphe nucleus
nTPM: 199.3
2750 Male, age 76, both hemispheres 243.7
2016 Female, age 72, unknown 191.8
2047 Male, age 72, unknown 189.4
1828 Male, age 53, unknown 186.1
2298 Female, age 72, unknown 185.5
Inferior colliculus
nTPM: 195.8
1848 Female, age 42, unknown 202.0
2849 Male, age 72, unknown 200.9
2097 Female, age 72, unknown 191.7
1890 Male, age 53, unknown 188.5
Median raphe nucleus
nTPM: 251.4
2220 Male, age 76, midline 251.4
Periaquaductal grey, anterior
nTPM: 176.8
1947 Male, age 18, unknown 198.4
1795 Male, age 51, unknown 167.0
2502 Female, age 75, unknown 165.2
Periaquaductal grey, dorsal
nTPM: 214.3
2850 Male, age 76, both hemispheres 268.4
2464 Female, age 72, unknown 207.4
1831 Male, age 72, unknown 202.6
1840 Male, age 53, unknown 178.9
Periaquaductal grey, lateral
nTPM: 209.6
2140 Male, age 76, both hemispheres 245.4
2053 Male, age 18, unknown 200.5
2272 Male, age 74, both hemispheres 183.0
Pretectal area
nTPM: 195.9
2667 Female, age 75, unknown 247.1
2316 Male, age 76, right hemisphere 213.8
1815 Male, age 53, unknown 208.6
2273 Male, age 74, both hemispheres 198.3
2407 Male, age 75, both hemispheres 195.9
2825 Male, age 18, unknown 192.8
1817 Female, age 42, unknown 189.3
2224 Female, age 72, unknown 188.9
1944 Female, age 72, unknown 186.2
1816 Male, age 51, unknown 167.0
2007 Male, age 72, unknown 166.4
Red nucleus
nTPM: 220.0
2823 Male, age 76, right hemisphere 262.7
1904 Male, age 53, unknown 244.4
1954 Female, age 42, unknown 237.9
1821 Female, age 72, unknown 235.0
1865 Male, age 51, unknown 230.4
2725 Female, age 75, unknown 228.7
2503 Female, age 72, unknown 225.9
2769 Male, age 72, unknown 213.5
2227 Male, age 72, unknown 213.1
2588 Male, age 74, left hemisphere 193.9
2785 Male, age 18, unknown 182.9
2584 Male, age 75, left hemisphere 171.2
Substantia nigra
nTPM: 204.6
2409 Female, age 72, unknown 250.5
2699 Male, age 18, unknown 250.3
1851 Male, age 51, unknown 213.2
2241 Male, age 72, unknown 211.4
1916 Female, age 42, unknown 203.3
2590 Female, age 75, unknown 195.6
2583 Male, age 75, right hemisphere 193.9
1889 Female, age 72, unknown 190.7
1941 Male, age 53, unknown 188.5
2665 Male, age 74, both hemispheres 148.6
Superior colliculus
nTPM: 184.6
1913 Female, age 42, unknown 225.9
1995 Male, age 72, unknown 217.2
1895 Male, age 76, right hemisphere 204.6
2087 Female, age 72, unknown 192.0
1839 Male, age 51, unknown 187.1
2587 Male, age 74, left hemisphere 186.8
1796 Male, age 53, unknown 177.6
2261 Male, age 18, unknown 165.3
2668 Female, age 75, unknown 151.9
2664 Male, age 75, both hemispheres 137.5
Ventral tegmental area
nTPM: 200.4
2410 Female, age 72, unknown 229.5
2021 Male, age 53, unknown 208.3
2218 Male, age 76, both hemispheres 202.7
1915 Female, age 42, unknown 192.9
1942 Male, age 51, unknown 192.1
2223 Female, age 72, unknown 176.6

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 147.3
Samples: 183

Max nTPM: 339.4
Min nTPM: 67.3
Std nTPM: 42.8
Median nTPM: 140.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 339.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 329.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 283.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 261.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 257.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 248.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 222.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 221.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 221.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 216.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 215.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 213.9
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 211.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 207.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 206.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 206.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 203.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 201.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 200.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 200.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 200.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 197.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 196.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 195.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 194.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 192.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 190.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 188.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 186.7
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 186.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 185.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 183.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 183.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 181.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 179.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 179.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 178.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 177.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 175.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 174.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 173.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 172.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 169.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 168.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 168.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 168.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 168.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 167.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 167.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 164.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 163.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 162.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 162.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 162.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 162.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 161.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 160.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 160.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 159.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 159.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 159.7
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 159.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 158.1
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 157.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 155.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 155.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 155.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 155.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 155.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 154.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 153.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 153.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 152.1
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 150.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 149.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 148.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 147.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 146.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 145.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 144.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 144.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 144.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 144.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 144.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 143.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 142.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 142.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 141.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 141.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 141.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 141.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 140.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 140.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 140.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 139.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 139.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 137.2
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 136.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 135.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 134.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 134.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 134.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 133.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 133.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 132.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 132.2
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 131.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 130.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 129.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 128.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 127.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 126.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 126.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 126.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 125.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 124.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 124.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 124.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 124.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 124.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 124.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 123.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 123.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 122.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 121.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 121.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 121.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 120.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 120.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 120.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 120.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 119.9
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 119.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 119.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 119.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 119.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 118.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 117.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 117.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 117.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 116.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 116.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 116.7
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 115.6
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 115.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 114.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 114.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 113.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 113.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 112.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 111.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 110.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 110.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 110.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 109.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 108.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 107.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 107.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 107.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 107.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 106.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 106.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 105.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 105.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 105.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 104.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 103.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 103.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 101.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 99.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 97.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 97.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 96.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 92.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 91.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 88.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 88.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 87.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 83.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 81.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 71.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 67.3
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

486.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 486.4
FF:10158-103A5 76 years, female 486.4

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 175.3
Samples: 4

Max nTPM: 183.6
Min nTPM: 162.4
Sample A Female 172.9
Sample B Female 162.4
Sample C Male 182.2
Sample D Male 183.6
Midbrain
nTPM: 171.9
Samples: 4

Max nTPM: 205.8
Min nTPM: 148.0
Sample A Female 205.8
Sample B Female 178.0
Sample C Male 148.0
Sample D Male 155.7
Periaqueductal gray
nTPM: 148.5
Samples: 3

Max nTPM: 163.6
Min nTPM: 138.4
Sample B Female 163.6
Sample C Male 138.4
Sample D Male 143.6
Superior colliculi
nTPM: 162.3
Samples: 4

Max nTPM: 173.4
Min nTPM: 148.6
Sample A Female 148.6
Sample B Female 173.4
Sample C Male 169.0
Sample D Male 158.1

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 144.0
Samples: 4

Max nTPM: 153.7
Min nTPM: 137.4
Sample A Male 137.4
Sample B Male 140.6
Sample C Female 153.7
Sample D Female 144.4

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
67978473 Antisense, RP_040923_01_B10, Mouse strain C57BL/6J (56 days, male) 6.2
71991953 Antisense, RP_051012_03_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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