A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.8
nTPM
Monaco:
74.9
nTPM
Schmiedel:
24.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.8
HPA sample
nTPM
Memory B-cell nTPM: 27.8
Samples: 6
Max nTPM: 43.7
Min nTPM: 0.1
P10809_1017
31.6
P10809_1025
43.7
P10809_1044
0.1
P10809_1063
24.1
P10809_1092
27.2
P10809_1105
40.1
Naive B-cell nTPM: 26.7
Samples: 6
Max nTPM: 46.6
Min nTPM: 17.7
P10809_1011
22.2
P10809_1029
25.0
P10809_1048
46.6
P10809_1067
17.7
P10809_1091
21.3
P10809_1104
27.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 57.7
Samples: 4
Max nTPM: 79.9
Min nTPM: 45.8
RHH5310_R3677
79.9
RHH5218_R3590
55.8
RHH5247_R3619
45.8
RHH5276_R3648
49.2
Naive B-cell nTPM: 49.4
Samples: 4
Max nTPM: 62.5
Min nTPM: 43.6
RHH5308_R3675
62.5
RHH5216_R3588
44.1
RHH5245_R3617
43.6
RHH5274_R3646
47.4
Non-switched memory B-cell nTPM: 61.9
Samples: 4
Max nTPM: 69.5
Min nTPM: 49.4
RHH5309_R3676
65.5
RHH5217_R3589
49.4
RHH5246_R3618
63.0
RHH5275_R3647
69.5
Plasmablast nTPM: 57.9
Samples: 4
Max nTPM: 69.1
Min nTPM: 35.8
RHH5312_R3679
69.1
RHH5220_R3592
60.3
RHH5249_R3621
35.8
RHH5278_R3650
66.5
Switched memory B-cell nTPM: 74.9
Samples: 4
Max nTPM: 96.0
Min nTPM: 52.5
RHH5311_R3678
96.0
RHH5219_R3591
52.5
RHH5248_R3620
76.2
RHH5277_R3649
75.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.9
Schmiedel sample id
TPM
Naive B-cell TPM: 24.9
Samples: 91
Max TPM: 48.1
Min TPM: 2.6
B_CELL_NAIVE_1
48.1
B_CELL_NAIVE_2
47.0
B_CELL_NAIVE_3
45.7
B_CELL_NAIVE_4
45.6
B_CELL_NAIVE_5
45.3
B_CELL_NAIVE_6
44.7
B_CELL_NAIVE_7
43.9
B_CELL_NAIVE_8
43.5
B_CELL_NAIVE_9
42.8
B_CELL_NAIVE_10
42.5
B_CELL_NAIVE_11
41.9
B_CELL_NAIVE_12
41.5
B_CELL_NAIVE_13
41.2
B_CELL_NAIVE_14
41.0
B_CELL_NAIVE_15
40.1
B_CELL_NAIVE_16
39.2
B_CELL_NAIVE_17
39.0
B_CELL_NAIVE_18
38.8
B_CELL_NAIVE_19
36.9
B_CELL_NAIVE_20
33.9
B_CELL_NAIVE_21
32.5
B_CELL_NAIVE_22
32.3
B_CELL_NAIVE_23
32.0
B_CELL_NAIVE_24
31.8
B_CELL_NAIVE_25
31.8
B_CELL_NAIVE_26
31.6
B_CELL_NAIVE_27
31.3
B_CELL_NAIVE_28
31.2
B_CELL_NAIVE_29
31.0
B_CELL_NAIVE_30
31.0
B_CELL_NAIVE_31
29.7
B_CELL_NAIVE_32
29.4
B_CELL_NAIVE_33
29.3
B_CELL_NAIVE_34
28.9
B_CELL_NAIVE_35
28.5
B_CELL_NAIVE_36
28.4
B_CELL_NAIVE_37
28.3
B_CELL_NAIVE_38
28.2
B_CELL_NAIVE_39
28.2
B_CELL_NAIVE_40
27.9
B_CELL_NAIVE_41
26.8
B_CELL_NAIVE_42
26.3
B_CELL_NAIVE_43
25.7
B_CELL_NAIVE_44
25.2
B_CELL_NAIVE_45
24.9
B_CELL_NAIVE_46
24.6
B_CELL_NAIVE_47
24.4
B_CELL_NAIVE_48
23.5
B_CELL_NAIVE_49
23.1
B_CELL_NAIVE_50
23.0
B_CELL_NAIVE_51
22.8
B_CELL_NAIVE_52
22.6
B_CELL_NAIVE_53
22.6
B_CELL_NAIVE_54
22.0
B_CELL_NAIVE_55
21.6
B_CELL_NAIVE_56
21.4
B_CELL_NAIVE_57
21.1
B_CELL_NAIVE_58
21.1
B_CELL_NAIVE_59
21.1
B_CELL_NAIVE_60
20.8
B_CELL_NAIVE_61
20.6
B_CELL_NAIVE_62
20.4
B_CELL_NAIVE_63
20.4
B_CELL_NAIVE_64
17.4
B_CELL_NAIVE_65
17.0
B_CELL_NAIVE_66
17.0
B_CELL_NAIVE_67
16.5
B_CELL_NAIVE_68
15.9
B_CELL_NAIVE_69
15.7
B_CELL_NAIVE_70
14.6
B_CELL_NAIVE_71
14.1
B_CELL_NAIVE_72
13.7
B_CELL_NAIVE_73
13.5
B_CELL_NAIVE_74
13.2
B_CELL_NAIVE_75
12.2
B_CELL_NAIVE_76
11.5
B_CELL_NAIVE_77
11.1
B_CELL_NAIVE_78
9.9
B_CELL_NAIVE_79
9.6
B_CELL_NAIVE_80
9.6
B_CELL_NAIVE_81
8.3
B_CELL_NAIVE_82
8.2
B_CELL_NAIVE_83
7.7
B_CELL_NAIVE_84
7.6
B_CELL_NAIVE_85
7.5
B_CELL_NAIVE_86
6.8
B_CELL_NAIVE_87
4.5
B_CELL_NAIVE_88
4.3
B_CELL_NAIVE_89
4.1
B_CELL_NAIVE_90
3.4
B_CELL_NAIVE_91
2.6
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