A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
41.4
nTPM
Monaco:
116.6
nTPM
Schmiedel:
48.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.4
HPA sample
nTPM
Classical monocyte nTPM: 39.9
Samples: 6
Max nTPM: 45.4
Min nTPM: 30.0
P10809_1003
42.6
P10809_1020
44.4
P10809_1039
36.9
P10809_1058
30.0
P10809_1080
40.1
P10809_1107
45.4
Intermediate monocyte nTPM: 37.9
Samples: 6
Max nTPM: 47.6
Min nTPM: 21.6
P10809_1004
38.9
P10809_1023
39.5
P10809_1042
47.6
P10809_1061
40.3
P10809_1081
21.6
P10809_1108
39.4
Non-classical monocyte nTPM: 41.4
Samples: 5
Max nTPM: 55.0
Min nTPM: 20.8
P10809_1005
37.9
P10809_1053
48.5
P10809_1072
55.0
P10809_1082
20.8
P10809_1109
44.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.6
Monaco sample
nTPM
Classical monocyte nTPM: 116.6
Samples: 4
Max nTPM: 139.6
Min nTPM: 85.7
RHH5313_R3680
139.6
RHH5221_R3593
85.7
RHH5250_R3622
108.5
RHH5279_R3651
132.6
Intermediate monocyte nTPM: 85.0
Samples: 4
Max nTPM: 103.2
Min nTPM: 66.1
RHH5314_R3681
103.2
RHH5222_R3594
66.1
RHH5251_R3623
77.3
RHH5280_R3652
93.3
Non-classical monocyte nTPM: 77.7
Samples: 4
Max nTPM: 99.6
Min nTPM: 59.7
RHH5315_R3682
99.6
RHH5223_R3595
59.7
RHH5252_R3624
89.7
RHH5281_R3653
61.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.6
Schmiedel sample id
TPM
Classical monocyte TPM: 48.7
Samples: 91
Max TPM: 100.9
Min TPM: 17.1
MONOCYTES_1
100.9
MONOCYTES_2
93.6
MONOCYTES_3
90.1
MONOCYTES_4
84.1
MONOCYTES_5
82.9
MONOCYTES_6
79.3
MONOCYTES_7
77.9
MONOCYTES_8
74.8
MONOCYTES_9
74.6
MONOCYTES_10
72.9
MONOCYTES_11
72.5
MONOCYTES_12
72.1
MONOCYTES_13
71.8
MONOCYTES_14
71.5
MONOCYTES_15
71.2
MONOCYTES_16
70.9
MONOCYTES_17
70.3
MONOCYTES_18
69.9
MONOCYTES_19
68.4
MONOCYTES_20
68.0
MONOCYTES_21
66.6
MONOCYTES_22
65.7
MONOCYTES_23
64.2
MONOCYTES_24
63.5
MONOCYTES_25
63.2
MONOCYTES_26
60.6
MONOCYTES_27
59.0
MONOCYTES_28
59.0
MONOCYTES_29
57.5
MONOCYTES_30
57.2
MONOCYTES_31
56.5
MONOCYTES_32
55.7
MONOCYTES_33
52.8
MONOCYTES_34
51.9
MONOCYTES_35
51.2
MONOCYTES_36
50.5
MONOCYTES_37
50.1
MONOCYTES_38
49.4
MONOCYTES_39
49.1
MONOCYTES_40
48.4
MONOCYTES_41
48.3
MONOCYTES_42
48.2
MONOCYTES_43
48.1
MONOCYTES_44
47.8
MONOCYTES_45
46.0
MONOCYTES_46
45.7
MONOCYTES_47
45.4
MONOCYTES_48
45.3
MONOCYTES_49
44.7
MONOCYTES_50
44.1
MONOCYTES_51
44.1
MONOCYTES_52
43.6
MONOCYTES_53
43.3
MONOCYTES_54
41.1
MONOCYTES_55
40.9
MONOCYTES_56
40.8
MONOCYTES_57
40.7
MONOCYTES_58
38.6
MONOCYTES_59
37.9
MONOCYTES_60
37.2
MONOCYTES_61
37.1
MONOCYTES_62
37.0
MONOCYTES_63
36.9
MONOCYTES_64
36.3
MONOCYTES_65
34.6
MONOCYTES_66
34.3
MONOCYTES_67
33.5
MONOCYTES_68
33.3
MONOCYTES_69
32.9
MONOCYTES_70
32.5
MONOCYTES_71
32.2
MONOCYTES_72
31.7
MONOCYTES_73
31.4
MONOCYTES_74
30.9
MONOCYTES_75
30.5
MONOCYTES_76
30.4
MONOCYTES_77
28.3
MONOCYTES_78
27.9
MONOCYTES_79
27.3
MONOCYTES_80
26.1
MONOCYTES_81
25.6
MONOCYTES_82
25.1
MONOCYTES_83
23.6
MONOCYTES_84
23.0
MONOCYTES_85
22.8
MONOCYTES_86
22.6
MONOCYTES_87
22.2
MONOCYTES_88
20.1
MONOCYTES_89
20.0
MONOCYTES_90
18.7
MONOCYTES_91
17.1
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Non-classical monocyte TPM: 30.6
Samples: 90
Max TPM: 71.6
Min TPM: 5.3
M2_1
71.6
M2_2
67.0
M2_3
66.1
M2_4
62.4
M2_5
59.8
M2_6
59.3
M2_7
58.1
M2_8
58.0
M2_9
54.6
M2_10
49.7
M2_11
48.8
M2_12
47.1
M2_13
46.2
M2_14
45.6
M2_15
45.1
M2_16
44.7
M2_17
44.4
M2_18
44.1
M2_19
42.8
M2_20
42.4
M2_21
41.8
M2_22
41.2
M2_23
40.6
M2_24
40.0
M2_25
39.5
M2_26
39.4
M2_27
39.0
M2_28
38.8
M2_29
37.4
M2_30
37.1
M2_31
36.4
M2_32
35.9
M2_33
35.9
M2_34
35.0
M2_35
34.7
M2_36
33.3
M2_37
33.0
M2_38
32.9
M2_39
32.0
M2_40
31.8
M2_41
31.5
M2_42
31.3
M2_43
29.7
M2_44
29.7
M2_45
29.6
M2_46
28.8
M2_47
28.7
M2_48
27.9
M2_49
27.4
M2_50
27.3
M2_51
27.0
M2_52
26.0
M2_53
25.7
M2_54
25.4
M2_55
24.9
M2_56
24.8
M2_57
23.7
M2_58
23.4
M2_59
23.3
M2_60
23.2
M2_61
22.1
M2_62
21.6
M2_63
21.6
M2_64
19.6
M2_65
19.0
M2_66
18.9
M2_67
18.1
M2_68
18.1
M2_69
17.8
M2_70
17.4
M2_71
16.2
M2_72
15.5
M2_73
15.4
M2_74
13.9
M2_75
13.9
M2_76
13.6
M2_77
13.2
M2_78
13.0
M2_79
12.8
M2_80
11.7
M2_81
11.5
M2_82
11.5
M2_83
11.1
M2_84
10.4
M2_85
10.2
M2_86
10.2
M2_87
7.6
M2_88
7.3
M2_89
5.5
M2_90
5.3
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