A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.6
nTPM
Monaco:
83.8
nTPM
Schmiedel:
56.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.6
HPA sample
nTPM
NK-cell nTPM: 23.6
Samples: 6
Max nTPM: 48.7
Min nTPM: 0.1
P10809_1013
20.5
P10809_1033
48.7
P10809_1052
19.7
P10809_1071
23.7
P10809_1093
0.1
P10809_1103
28.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.8
Monaco sample
nTPM
NK-cell nTPM: 83.8
Samples: 4
Max nTPM: 106.6
Min nTPM: 70.6
RHH5316_R3683
106.6
RHH5224_R3596
84.4
RHH5253_R3625
73.4
RHH5282_R3654
70.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.5
Schmiedel sample id
TPM
NK-cell TPM: 56.5
Samples: 90
Max TPM: 112.6
Min TPM: 9.3
NK_1
112.6
NK_2
110.0
NK_3
109.1
NK_4
107.2
NK_5
106.9
NK_6
102.9
NK_7
99.5
NK_8
93.8
NK_9
93.3
NK_10
92.1
NK_11
91.4
NK_12
90.9
NK_13
89.9
NK_14
86.3
NK_15
85.9
NK_16
85.0
NK_17
83.1
NK_18
77.3
NK_19
76.9
NK_20
76.5
NK_21
75.4
NK_22
75.3
NK_23
74.9
NK_24
73.9
NK_25
73.9
NK_26
72.3
NK_27
70.9
NK_28
70.5
NK_29
70.2
NK_30
69.2
NK_31
69.1
NK_32
67.3
NK_33
66.3
NK_34
66.2
NK_35
65.3
NK_36
65.3
NK_37
64.2
NK_38
63.5
NK_39
62.7
NK_40
62.1
NK_41
61.7
NK_42
61.7
NK_43
61.4
NK_44
60.4
NK_45
57.5
NK_46
57.5
NK_47
55.0
NK_48
53.4
NK_49
53.4
NK_50
51.0
NK_51
51.0
NK_52
50.8
NK_53
50.4
NK_54
49.0
NK_55
47.9
NK_56
46.8
NK_57
46.7
NK_58
44.6
NK_59
44.0
NK_60
43.7
NK_61
41.0
NK_62
40.9
NK_63
40.0
NK_64
37.7
NK_65
37.0
NK_66
36.8
NK_67
35.2
NK_68
31.2
NK_69
31.1
NK_70
31.1
NK_71
29.6
NK_72
29.3
NK_73
28.6
NK_74
27.7
NK_75
27.6
NK_76
26.9
NK_77
26.6
NK_78
25.0
NK_79
23.8
NK_80
21.8
NK_81
21.8
NK_82
20.6
NK_83
18.7
NK_84
17.4
NK_85
16.8
NK_86
15.9
NK_87
15.2
NK_88
13.7
NK_89
12.4
NK_90
9.3
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