A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.9
nTPM
Monaco:
46.5
nTPM
Schmiedel:
164.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.9
HPA sample
nTPM
Memory B-cell nTPM: 8.0
Samples: 6
Max nTPM: 11.1
Min nTPM: 5.3
P10809_1017
5.3
P10809_1025
11.1
P10809_1044
9.9
P10809_1063
5.6
P10809_1092
9.3
P10809_1105
6.5
Naive B-cell nTPM: 7.1
Samples: 6
Max nTPM: 10.6
Min nTPM: 3.7
P10809_1011
3.7
P10809_1029
7.4
P10809_1048
10.6
P10809_1067
3.8
P10809_1091
10.1
P10809_1104
7.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 45.0
Samples: 4
Max nTPM: 60.2
Min nTPM: 36.7
RHH5310_R3677
37.0
RHH5218_R3590
36.7
RHH5247_R3619
46.0
RHH5276_R3648
60.2
Naive B-cell nTPM: 42.9
Samples: 4
Max nTPM: 63.5
Min nTPM: 25.9
RHH5308_R3675
35.1
RHH5216_R3588
25.9
RHH5245_R3617
63.5
RHH5274_R3646
46.9
Non-switched memory B-cell nTPM: 46.6
Samples: 4
Max nTPM: 64.4
Min nTPM: 35.0
RHH5309_R3676
41.9
RHH5217_R3589
35.0
RHH5246_R3618
64.4
RHH5275_R3647
44.9
Plasmablast nTPM: 39.6
Samples: 4
Max nTPM: 44.5
Min nTPM: 35.4
RHH5312_R3679
42.9
RHH5220_R3592
44.5
RHH5249_R3621
35.7
RHH5278_R3650
35.4
Switched memory B-cell nTPM: 38.5
Samples: 4
Max nTPM: 49.1
Min nTPM: 25.1
RHH5311_R3678
25.1
RHH5219_R3591
49.1
RHH5248_R3620
32.5
RHH5277_R3649
47.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
164.8
Schmiedel sample id
TPM
Naive B-cell TPM: 164.8
Samples: 91
Max TPM: 273.1
Min TPM: 86.0
B_CELL_NAIVE_1
273.1
B_CELL_NAIVE_2
257.6
B_CELL_NAIVE_3
254.8
B_CELL_NAIVE_4
239.4
B_CELL_NAIVE_5
233.2
B_CELL_NAIVE_6
217.6
B_CELL_NAIVE_7
214.5
B_CELL_NAIVE_8
210.5
B_CELL_NAIVE_9
209.8
B_CELL_NAIVE_10
206.2
B_CELL_NAIVE_11
205.8
B_CELL_NAIVE_12
201.2
B_CELL_NAIVE_13
198.8
B_CELL_NAIVE_14
198.2
B_CELL_NAIVE_15
197.0
B_CELL_NAIVE_16
195.5
B_CELL_NAIVE_17
194.7
B_CELL_NAIVE_18
194.1
B_CELL_NAIVE_19
193.3
B_CELL_NAIVE_20
191.2
B_CELL_NAIVE_21
190.3
B_CELL_NAIVE_22
189.1
B_CELL_NAIVE_23
186.8
B_CELL_NAIVE_24
185.9
B_CELL_NAIVE_25
184.9
B_CELL_NAIVE_26
177.1
B_CELL_NAIVE_27
174.8
B_CELL_NAIVE_28
174.2
B_CELL_NAIVE_29
174.1
B_CELL_NAIVE_30
171.0
B_CELL_NAIVE_31
169.8
B_CELL_NAIVE_32
168.3
B_CELL_NAIVE_33
168.0
B_CELL_NAIVE_34
167.8
B_CELL_NAIVE_35
167.6
B_CELL_NAIVE_36
167.5
B_CELL_NAIVE_37
165.4
B_CELL_NAIVE_38
164.9
B_CELL_NAIVE_39
164.6
B_CELL_NAIVE_40
164.2
B_CELL_NAIVE_41
163.3
B_CELL_NAIVE_42
162.8
B_CELL_NAIVE_43
162.3
B_CELL_NAIVE_44
161.0
B_CELL_NAIVE_45
160.3
B_CELL_NAIVE_46
159.2
B_CELL_NAIVE_47
158.8
B_CELL_NAIVE_48
156.8
B_CELL_NAIVE_49
156.8
B_CELL_NAIVE_50
156.6
B_CELL_NAIVE_51
156.5
B_CELL_NAIVE_52
156.2
B_CELL_NAIVE_53
155.9
B_CELL_NAIVE_54
153.7
B_CELL_NAIVE_55
153.3
B_CELL_NAIVE_56
153.3
B_CELL_NAIVE_57
152.4
B_CELL_NAIVE_58
151.5
B_CELL_NAIVE_59
150.2
B_CELL_NAIVE_60
150.0
B_CELL_NAIVE_61
149.9
B_CELL_NAIVE_62
149.8
B_CELL_NAIVE_63
149.8
B_CELL_NAIVE_64
149.3
B_CELL_NAIVE_65
148.8
B_CELL_NAIVE_66
147.5
B_CELL_NAIVE_67
144.0
B_CELL_NAIVE_68
142.3
B_CELL_NAIVE_69
142.1
B_CELL_NAIVE_70
141.0
B_CELL_NAIVE_71
140.8
B_CELL_NAIVE_72
138.9
B_CELL_NAIVE_73
137.9
B_CELL_NAIVE_74
137.3
B_CELL_NAIVE_75
134.0
B_CELL_NAIVE_76
133.5
B_CELL_NAIVE_77
131.1
B_CELL_NAIVE_78
130.7
B_CELL_NAIVE_79
130.5
B_CELL_NAIVE_80
130.2
B_CELL_NAIVE_81
130.1
B_CELL_NAIVE_82
129.1
B_CELL_NAIVE_83
128.8
B_CELL_NAIVE_84
126.0
B_CELL_NAIVE_85
122.3
B_CELL_NAIVE_86
121.3
B_CELL_NAIVE_87
121.3
B_CELL_NAIVE_88
121.1
B_CELL_NAIVE_89
119.6
B_CELL_NAIVE_90
86.2
B_CELL_NAIVE_91
86.0
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