A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.2
nTPM
Monaco:
67.8
nTPM
Schmiedel:
210.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.2
HPA sample
nTPM
NK-cell nTPM: 7.2
Samples: 6
Max nTPM: 12.2
Min nTPM: 4.7
P10809_1013
7.0
P10809_1033
5.1
P10809_1052
4.7
P10809_1071
7.6
P10809_1093
12.2
P10809_1103
6.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.8
Monaco sample
nTPM
NK-cell nTPM: 67.8
Samples: 4
Max nTPM: 86.9
Min nTPM: 56.9
RHH5316_R3683
64.8
RHH5224_R3596
62.5
RHH5253_R3625
86.9
RHH5282_R3654
56.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
210.5
Schmiedel sample id
TPM
NK-cell TPM: 210.5
Samples: 90
Max TPM: 392.2
Min TPM: 105.1
NK_1
392.2
NK_2
375.6
NK_3
364.8
NK_4
351.0
NK_5
330.1
NK_6
329.9
NK_7
328.2
NK_8
327.0
NK_9
306.5
NK_10
303.3
NK_11
299.6
NK_12
296.0
NK_13
290.2
NK_14
288.7
NK_15
287.2
NK_16
284.0
NK_17
282.6
NK_18
277.9
NK_19
275.5
NK_20
270.5
NK_21
266.6
NK_22
265.9
NK_23
265.0
NK_24
261.2
NK_25
259.4
NK_26
257.3
NK_27
255.0
NK_28
254.2
NK_29
252.2
NK_30
252.0
NK_31
240.0
NK_32
235.3
NK_33
233.6
NK_34
228.4
NK_35
224.7
NK_36
223.4
NK_37
219.1
NK_38
217.5
NK_39
212.7
NK_40
212.5
NK_41
210.5
NK_42
208.6
NK_43
207.7
NK_44
206.6
NK_45
203.7
NK_46
201.9
NK_47
200.7
NK_48
199.9
NK_49
198.7
NK_50
195.8
NK_51
192.8
NK_52
191.2
NK_53
187.8
NK_54
186.3
NK_55
184.4
NK_56
183.1
NK_57
182.2
NK_58
178.0
NK_59
177.8
NK_60
164.7
NK_61
164.7
NK_62
163.4
NK_63
161.3
NK_64
157.8
NK_65
153.3
NK_66
150.4
NK_67
145.7
NK_68
142.5
NK_69
142.2
NK_70
139.6
NK_71
137.8
NK_72
135.5
NK_73
134.9
NK_74
134.8
NK_75
129.9
NK_76
128.9
NK_77
128.6
NK_78
127.5
NK_79
126.3
NK_80
126.1
NK_81
125.1
NK_82
124.1
NK_83
123.8
NK_84
116.3
NK_85
116.3
NK_86
113.7
NK_87
112.3
NK_88
109.7
NK_89
107.5
NK_90
105.1
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