A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.5
nTPM
Monaco:
45.5
nTPM
Schmiedel:
175.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.5
HPA sample
nTPM
Classical monocyte nTPM: 6.2
Samples: 6
Max nTPM: 9.3
Min nTPM: 4.8
P10809_1003
4.8
P10809_1020
6.2
P10809_1039
9.3
P10809_1058
5.4
P10809_1080
6.2
P10809_1107
5.3
Intermediate monocyte nTPM: 4.1
Samples: 6
Max nTPM: 5.2
Min nTPM: 0.5
P10809_1004
3.8
P10809_1023
5.2
P10809_1042
4.8
P10809_1061
0.5
P10809_1081
5.0
P10809_1108
5.2
Non-classical monocyte nTPM: 11.5
Samples: 5
Max nTPM: 35.6
Min nTPM: 4.2
P10809_1005
4.2
P10809_1053
5.4
P10809_1072
35.6
P10809_1082
4.3
P10809_1109
8.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.5
Monaco sample
nTPM
Classical monocyte nTPM: 43.7
Samples: 4
Max nTPM: 51.3
Min nTPM: 29.5
RHH5313_R3680
47.1
RHH5221_R3593
29.5
RHH5250_R3622
46.8
RHH5279_R3651
51.3
Intermediate monocyte nTPM: 43.7
Samples: 4
Max nTPM: 50.9
Min nTPM: 32.0
RHH5314_R3681
41.5
RHH5222_R3594
50.3
RHH5251_R3623
50.9
RHH5280_R3652
32.0
Non-classical monocyte nTPM: 45.5
Samples: 4
Max nTPM: 68.6
Min nTPM: 29.2
RHH5315_R3682
39.5
RHH5223_R3595
29.2
RHH5252_R3624
68.6
RHH5281_R3653
44.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
175.6
Schmiedel sample id
TPM
Classical monocyte TPM: 175.6
Samples: 91
Max TPM: 232.7
Min TPM: 124.2
MONOCYTES_1
232.7
MONOCYTES_2
222.9
MONOCYTES_3
218.3
MONOCYTES_4
216.6
MONOCYTES_5
213.7
MONOCYTES_6
211.8
MONOCYTES_7
211.8
MONOCYTES_8
210.5
MONOCYTES_9
205.8
MONOCYTES_10
202.6
MONOCYTES_11
200.1
MONOCYTES_12
198.9
MONOCYTES_13
197.8
MONOCYTES_14
197.1
MONOCYTES_15
197.0
MONOCYTES_16
195.9
MONOCYTES_17
195.8
MONOCYTES_18
195.4
MONOCYTES_19
195.1
MONOCYTES_20
194.8
MONOCYTES_21
194.7
MONOCYTES_22
194.7
MONOCYTES_23
193.1
MONOCYTES_24
193.0
MONOCYTES_25
190.9
MONOCYTES_26
190.2
MONOCYTES_27
189.4
MONOCYTES_28
187.0
MONOCYTES_29
186.6
MONOCYTES_30
185.1
MONOCYTES_31
184.1
MONOCYTES_32
183.3
MONOCYTES_33
182.5
MONOCYTES_34
182.1
MONOCYTES_35
180.7
MONOCYTES_36
180.3
MONOCYTES_37
180.0
MONOCYTES_38
179.9
MONOCYTES_39
179.3
MONOCYTES_40
179.2
MONOCYTES_41
178.4
MONOCYTES_42
178.2
MONOCYTES_43
177.7
MONOCYTES_44
177.2
MONOCYTES_45
175.2
MONOCYTES_46
175.1
MONOCYTES_47
174.6
MONOCYTES_48
174.5
MONOCYTES_49
174.4
MONOCYTES_50
173.3
MONOCYTES_51
172.8
MONOCYTES_52
172.7
MONOCYTES_53
172.1
MONOCYTES_54
171.5
MONOCYTES_55
171.4
MONOCYTES_56
169.8
MONOCYTES_57
169.7
MONOCYTES_58
168.2
MONOCYTES_59
167.4
MONOCYTES_60
167.3
MONOCYTES_61
165.1
MONOCYTES_62
164.8
MONOCYTES_63
164.6
MONOCYTES_64
163.6
MONOCYTES_65
163.3
MONOCYTES_66
161.6
MONOCYTES_67
161.5
MONOCYTES_68
160.8
MONOCYTES_69
160.7
MONOCYTES_70
160.3
MONOCYTES_71
159.6
MONOCYTES_72
159.3
MONOCYTES_73
158.8
MONOCYTES_74
158.3
MONOCYTES_75
157.4
MONOCYTES_76
156.8
MONOCYTES_77
156.6
MONOCYTES_78
151.8
MONOCYTES_79
150.0
MONOCYTES_80
148.0
MONOCYTES_81
147.5
MONOCYTES_82
146.9
MONOCYTES_83
146.1
MONOCYTES_84
143.3
MONOCYTES_85
141.2
MONOCYTES_86
138.6
MONOCYTES_87
131.1
MONOCYTES_88
128.5
MONOCYTES_89
127.2
MONOCYTES_90
125.8
MONOCYTES_91
124.2
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Non-classical monocyte TPM: 163.0
Samples: 90
Max TPM: 254.7
Min TPM: 81.5
M2_1
254.7
M2_2
242.9
M2_3
238.4
M2_4
235.5
M2_5
221.4
M2_6
210.7
M2_7
205.9
M2_8
202.7
M2_9
200.0
M2_10
199.3
M2_11
198.0
M2_12
195.2
M2_13
194.6
M2_14
191.8
M2_15
191.4
M2_16
191.3
M2_17
189.7
M2_18
189.7
M2_19
189.3
M2_20
188.9
M2_21
183.2
M2_22
182.9
M2_23
181.3
M2_24
178.9
M2_25
178.5
M2_26
177.1
M2_27
176.7
M2_28
174.2
M2_29
173.3
M2_30
172.2
M2_31
171.9
M2_32
169.1
M2_33
169.1
M2_34
169.0
M2_35
167.1
M2_36
166.5
M2_37
164.9
M2_38
164.0
M2_39
163.3
M2_40
162.8
M2_41
162.5
M2_42
162.0
M2_43
159.9
M2_44
159.7
M2_45
157.9
M2_46
157.3
M2_47
157.2
M2_48
157.2
M2_49
156.7
M2_50
156.4
M2_51
155.5
M2_52
155.5
M2_53
155.2
M2_54
153.8
M2_55
151.0
M2_56
150.8
M2_57
150.7
M2_58
150.4
M2_59
149.7
M2_60
149.7
M2_61
148.6
M2_62
148.1
M2_63
148.0
M2_64
147.1
M2_65
146.5
M2_66
145.6
M2_67
144.3
M2_68
143.3
M2_69
143.0
M2_70
141.3
M2_71
141.3
M2_72
140.4
M2_73
139.7
M2_74
139.3
M2_75
137.6
M2_76
136.9
M2_77
136.3
M2_78
133.7
M2_79
130.3
M2_80
128.0
M2_81
127.8
M2_82
127.2
M2_83
121.5
M2_84
121.5
M2_85
121.1
M2_86
118.0
M2_87
118.0
M2_88
116.7
M2_89
108.4
M2_90
81.5
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