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BETA
  • SUMMARY

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  • BRAIN

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  • IMMUNE

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  • RPS9
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:1122.9 nTPM
Monaco:197.7 nTPM
Schmiedel:249.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1122.9
HPA sample nTPM
Memory B-cell
nTPM: 1073.7
Samples: 6

Max nTPM: 1746.3
Min nTPM: 785.5
P10809_1017 1005.6
P10809_1025 1074.8
P10809_1044 1746.3
P10809_1063 785.5
P10809_1092 884.0
P10809_1105 946.0
Naive B-cell
nTPM: 1122.9
Samples: 6

Max nTPM: 1456.2
Min nTPM: 895.9
P10809_1011 996.3
P10809_1029 1456.2
P10809_1048 1225.9
P10809_1067 1057.4
P10809_1091 895.9
P10809_1104 1105.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

197.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 197.7
Samples: 4

Max nTPM: 318.8
Min nTPM: 1.4
RHH5310_R3677 283.4
RHH5218_R3590 187.2
RHH5247_R3619 318.8
RHH5276_R3648 1.4
Naive B-cell
nTPM: 63.4
Samples: 4

Max nTPM: 188.4
Min nTPM: 1.4
RHH5308_R3675 1.4
RHH5216_R3588 23.4
RHH5245_R3617 188.4
RHH5274_R3646 40.5
Non-switched memory B-cell
nTPM: 90.3
Samples: 4

Max nTPM: 122.3
Min nTPM: 56.2
RHH5309_R3676 100.7
RHH5217_R3589 56.2
RHH5246_R3618 122.3
RHH5275_R3647 82.0
Plasmablast
nTPM: 64.6
Samples: 4

Max nTPM: 237.4
Min nTPM: 1.9
RHH5312_R3679 237.4
RHH5220_R3592 14.2
RHH5249_R3621 4.8
RHH5278_R3650 1.9
Switched memory B-cell
nTPM: 94.1
Samples: 4

Max nTPM: 165.3
Min nTPM: 5.2
RHH5311_R3678 165.3
RHH5219_R3591 86.6
RHH5248_R3620 5.2
RHH5277_R3649 119.3

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

249.1
Schmiedel sample id TPM
Naive B-cell
TPM: 249.1
Samples: 91

Max TPM: 443.4
Min TPM: 34.8
B_CELL_NAIVE_1 443.4
B_CELL_NAIVE_2 439.4
B_CELL_NAIVE_3 425.4
B_CELL_NAIVE_4 423.3
B_CELL_NAIVE_5 418.3
B_CELL_NAIVE_6 402.3
B_CELL_NAIVE_7 400.3
B_CELL_NAIVE_8 399.3
B_CELL_NAIVE_9 392.2
B_CELL_NAIVE_10 383.4
B_CELL_NAIVE_11 383.2
B_CELL_NAIVE_12 383.1
B_CELL_NAIVE_13 382.5
B_CELL_NAIVE_14 377.5
B_CELL_NAIVE_15 364.7
B_CELL_NAIVE_16 361.4
B_CELL_NAIVE_17 357.4
B_CELL_NAIVE_18 353.3
B_CELL_NAIVE_19 351.5
B_CELL_NAIVE_20 342.7
B_CELL_NAIVE_21 330.8
B_CELL_NAIVE_22 326.8
B_CELL_NAIVE_23 324.3
B_CELL_NAIVE_24 322.5
B_CELL_NAIVE_25 320.9
B_CELL_NAIVE_26 319.2
B_CELL_NAIVE_27 313.9
B_CELL_NAIVE_28 312.7
B_CELL_NAIVE_29 311.0
B_CELL_NAIVE_30 310.9
B_CELL_NAIVE_31 307.7
B_CELL_NAIVE_32 304.3
B_CELL_NAIVE_33 294.3
B_CELL_NAIVE_34 294.0
B_CELL_NAIVE_35 290.5
B_CELL_NAIVE_36 290.2
B_CELL_NAIVE_37 288.0
B_CELL_NAIVE_38 286.4
B_CELL_NAIVE_39 284.6
B_CELL_NAIVE_40 282.8
B_CELL_NAIVE_41 281.1
B_CELL_NAIVE_42 276.1
B_CELL_NAIVE_43 260.8
B_CELL_NAIVE_44 257.7
B_CELL_NAIVE_45 256.2
B_CELL_NAIVE_46 253.2
B_CELL_NAIVE_47 252.5
B_CELL_NAIVE_48 252.1
B_CELL_NAIVE_49 246.7
B_CELL_NAIVE_50 244.9
B_CELL_NAIVE_51 240.6
B_CELL_NAIVE_52 239.4
B_CELL_NAIVE_53 235.1
B_CELL_NAIVE_54 224.8
B_CELL_NAIVE_55 220.1
B_CELL_NAIVE_56 217.7
B_CELL_NAIVE_57 216.0
B_CELL_NAIVE_58 214.4
B_CELL_NAIVE_59 214.3
B_CELL_NAIVE_60 206.2
B_CELL_NAIVE_61 199.7
B_CELL_NAIVE_62 197.5
B_CELL_NAIVE_63 192.9
B_CELL_NAIVE_64 187.6
B_CELL_NAIVE_65 187.1
B_CELL_NAIVE_66 184.6
B_CELL_NAIVE_67 172.4
B_CELL_NAIVE_68 172.1
B_CELL_NAIVE_69 170.7
B_CELL_NAIVE_70 157.0
B_CELL_NAIVE_71 152.3
B_CELL_NAIVE_72 152.2
B_CELL_NAIVE_73 148.7
B_CELL_NAIVE_74 141.7
B_CELL_NAIVE_75 140.7
B_CELL_NAIVE_76 137.7
B_CELL_NAIVE_77 137.0
B_CELL_NAIVE_78 133.0
B_CELL_NAIVE_79 123.6
B_CELL_NAIVE_80 118.5
B_CELL_NAIVE_81 102.1
B_CELL_NAIVE_82 99.4
B_CELL_NAIVE_83 90.1
B_CELL_NAIVE_84 87.0
B_CELL_NAIVE_85 67.9
B_CELL_NAIVE_86 67.3
B_CELL_NAIVE_87 61.7
B_CELL_NAIVE_88 51.7
B_CELL_NAIVE_89 49.1
B_CELL_NAIVE_90 36.9
B_CELL_NAIVE_91 34.8
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