A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1122.9
nTPM
Monaco:
197.7
nTPM
Schmiedel:
249.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1122.9
HPA sample
nTPM
Memory B-cell nTPM: 1073.7
Samples: 6
Max nTPM: 1746.3
Min nTPM: 785.5
P10809_1017
1005.6
P10809_1025
1074.8
P10809_1044
1746.3
P10809_1063
785.5
P10809_1092
884.0
P10809_1105
946.0
Naive B-cell nTPM: 1122.9
Samples: 6
Max nTPM: 1456.2
Min nTPM: 895.9
P10809_1011
996.3
P10809_1029
1456.2
P10809_1048
1225.9
P10809_1067
1057.4
P10809_1091
895.9
P10809_1104
1105.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
197.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 197.7
Samples: 4
Max nTPM: 318.8
Min nTPM: 1.4
RHH5310_R3677
283.4
RHH5218_R3590
187.2
RHH5247_R3619
318.8
RHH5276_R3648
1.4
Naive B-cell nTPM: 63.4
Samples: 4
Max nTPM: 188.4
Min nTPM: 1.4
RHH5308_R3675
1.4
RHH5216_R3588
23.4
RHH5245_R3617
188.4
RHH5274_R3646
40.5
Non-switched memory B-cell nTPM: 90.3
Samples: 4
Max nTPM: 122.3
Min nTPM: 56.2
RHH5309_R3676
100.7
RHH5217_R3589
56.2
RHH5246_R3618
122.3
RHH5275_R3647
82.0
Plasmablast nTPM: 64.6
Samples: 4
Max nTPM: 237.4
Min nTPM: 1.9
RHH5312_R3679
237.4
RHH5220_R3592
14.2
RHH5249_R3621
4.8
RHH5278_R3650
1.9
Switched memory B-cell nTPM: 94.1
Samples: 4
Max nTPM: 165.3
Min nTPM: 5.2
RHH5311_R3678
165.3
RHH5219_R3591
86.6
RHH5248_R3620
5.2
RHH5277_R3649
119.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
249.1
Schmiedel sample id
TPM
Naive B-cell TPM: 249.1
Samples: 91
Max TPM: 443.4
Min TPM: 34.8
B_CELL_NAIVE_1
443.4
B_CELL_NAIVE_2
439.4
B_CELL_NAIVE_3
425.4
B_CELL_NAIVE_4
423.3
B_CELL_NAIVE_5
418.3
B_CELL_NAIVE_6
402.3
B_CELL_NAIVE_7
400.3
B_CELL_NAIVE_8
399.3
B_CELL_NAIVE_9
392.2
B_CELL_NAIVE_10
383.4
B_CELL_NAIVE_11
383.2
B_CELL_NAIVE_12
383.1
B_CELL_NAIVE_13
382.5
B_CELL_NAIVE_14
377.5
B_CELL_NAIVE_15
364.7
B_CELL_NAIVE_16
361.4
B_CELL_NAIVE_17
357.4
B_CELL_NAIVE_18
353.3
B_CELL_NAIVE_19
351.5
B_CELL_NAIVE_20
342.7
B_CELL_NAIVE_21
330.8
B_CELL_NAIVE_22
326.8
B_CELL_NAIVE_23
324.3
B_CELL_NAIVE_24
322.5
B_CELL_NAIVE_25
320.9
B_CELL_NAIVE_26
319.2
B_CELL_NAIVE_27
313.9
B_CELL_NAIVE_28
312.7
B_CELL_NAIVE_29
311.0
B_CELL_NAIVE_30
310.9
B_CELL_NAIVE_31
307.7
B_CELL_NAIVE_32
304.3
B_CELL_NAIVE_33
294.3
B_CELL_NAIVE_34
294.0
B_CELL_NAIVE_35
290.5
B_CELL_NAIVE_36
290.2
B_CELL_NAIVE_37
288.0
B_CELL_NAIVE_38
286.4
B_CELL_NAIVE_39
284.6
B_CELL_NAIVE_40
282.8
B_CELL_NAIVE_41
281.1
B_CELL_NAIVE_42
276.1
B_CELL_NAIVE_43
260.8
B_CELL_NAIVE_44
257.7
B_CELL_NAIVE_45
256.2
B_CELL_NAIVE_46
253.2
B_CELL_NAIVE_47
252.5
B_CELL_NAIVE_48
252.1
B_CELL_NAIVE_49
246.7
B_CELL_NAIVE_50
244.9
B_CELL_NAIVE_51
240.6
B_CELL_NAIVE_52
239.4
B_CELL_NAIVE_53
235.1
B_CELL_NAIVE_54
224.8
B_CELL_NAIVE_55
220.1
B_CELL_NAIVE_56
217.7
B_CELL_NAIVE_57
216.0
B_CELL_NAIVE_58
214.4
B_CELL_NAIVE_59
214.3
B_CELL_NAIVE_60
206.2
B_CELL_NAIVE_61
199.7
B_CELL_NAIVE_62
197.5
B_CELL_NAIVE_63
192.9
B_CELL_NAIVE_64
187.6
B_CELL_NAIVE_65
187.1
B_CELL_NAIVE_66
184.6
B_CELL_NAIVE_67
172.4
B_CELL_NAIVE_68
172.1
B_CELL_NAIVE_69
170.7
B_CELL_NAIVE_70
157.0
B_CELL_NAIVE_71
152.3
B_CELL_NAIVE_72
152.2
B_CELL_NAIVE_73
148.7
B_CELL_NAIVE_74
141.7
B_CELL_NAIVE_75
140.7
B_CELL_NAIVE_76
137.7
B_CELL_NAIVE_77
137.0
B_CELL_NAIVE_78
133.0
B_CELL_NAIVE_79
123.6
B_CELL_NAIVE_80
118.5
B_CELL_NAIVE_81
102.1
B_CELL_NAIVE_82
99.4
B_CELL_NAIVE_83
90.1
B_CELL_NAIVE_84
87.0
B_CELL_NAIVE_85
67.9
B_CELL_NAIVE_86
67.3
B_CELL_NAIVE_87
61.7
B_CELL_NAIVE_88
51.7
B_CELL_NAIVE_89
49.1
B_CELL_NAIVE_90
36.9
B_CELL_NAIVE_91
34.8
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