A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
661.1
nTPM
Monaco:
59.2
nTPM
Schmiedel:
188.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
661.1
HPA sample
nTPM
NK-cell nTPM: 661.1
Samples: 6
Max nTPM: 853.5
Min nTPM: 365.7
P10809_1013
714.7
P10809_1033
719.9
P10809_1052
704.1
P10809_1071
608.7
P10809_1093
365.7
P10809_1103
853.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.2
Monaco sample
nTPM
NK-cell nTPM: 59.2
Samples: 4
Max nTPM: 127.4
Min nTPM: 0.0
RHH5316_R3683
127.4
RHH5224_R3596
26.5
RHH5253_R3625
0.0
RHH5282_R3654
82.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
188.0
Schmiedel sample id
TPM
NK-cell TPM: 188.0
Samples: 90
Max TPM: 351.4
Min TPM: 60.7
NK_1
351.4
NK_2
314.5
NK_3
308.1
NK_4
305.7
NK_5
304.3
NK_6
300.7
NK_7
298.0
NK_8
291.0
NK_9
284.0
NK_10
282.6
NK_11
273.4
NK_12
271.5
NK_13
268.5
NK_14
259.4
NK_15
259.2
NK_16
256.3
NK_17
252.7
NK_18
251.0
NK_19
241.6
NK_20
238.7
NK_21
238.5
NK_22
237.9
NK_23
235.3
NK_24
233.5
NK_25
233.1
NK_26
227.7
NK_27
226.4
NK_28
225.9
NK_29
225.5
NK_30
223.3
NK_31
222.4
NK_32
220.9
NK_33
218.0
NK_34
218.0
NK_35
218.0
NK_36
216.8
NK_37
216.4
NK_38
212.3
NK_39
210.9
NK_40
210.6
NK_41
208.8
NK_42
207.5
NK_43
200.4
NK_44
196.3
NK_45
193.4
NK_46
186.6
NK_47
186.3
NK_48
183.2
NK_49
182.8
NK_50
180.0
NK_51
179.0
NK_52
175.4
NK_53
175.2
NK_54
171.8
NK_55
167.1
NK_56
162.5
NK_57
159.6
NK_58
155.6
NK_59
152.9
NK_60
148.0
NK_61
147.6
NK_62
146.2
NK_63
142.0
NK_64
141.6
NK_65
135.1
NK_66
132.0
NK_67
130.7
NK_68
130.4
NK_69
129.3
NK_70
129.1
NK_71
125.5
NK_72
124.8
NK_73
122.2
NK_74
118.2
NK_75
117.3
NK_76
116.0
NK_77
113.8
NK_78
111.1
NK_79
109.6
NK_80
108.7
NK_81
99.6
NK_82
76.3
NK_83
75.0
NK_84
73.8
NK_85
73.0
NK_86
72.9
NK_87
72.5
NK_88
63.6
NK_89
62.5
NK_90
60.7
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