A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2704.6
nTPM
Monaco:
426.2
nTPM
Schmiedel:
899.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2704.6
HPA sample
nTPM
Memory B-cell nTPM: 2704.6
Samples: 6
Max nTPM: 3370.9
Min nTPM: 1888.5
P10809_1017
2632.6
P10809_1025
3032.1
P10809_1044
1888.5
P10809_1063
2749.7
P10809_1092
2553.9
P10809_1105
3370.9
Naive B-cell nTPM: 2543.8
Samples: 6
Max nTPM: 3053.0
Min nTPM: 1485.9
P10809_1011
3021.6
P10809_1029
2711.7
P10809_1048
1485.9
P10809_1067
2696.9
P10809_1091
2293.8
P10809_1104
3053.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
426.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 394.0
Samples: 4
Max nTPM: 650.0
Min nTPM: 93.1
RHH5310_R3677
361.1
RHH5218_R3590
93.1
RHH5247_R3619
471.8
RHH5276_R3648
650.0
Naive B-cell nTPM: 426.2
Samples: 4
Max nTPM: 867.9
Min nTPM: 96.8
RHH5308_R3675
383.1
RHH5216_R3588
96.8
RHH5245_R3617
867.9
RHH5274_R3646
357.0
Non-switched memory B-cell nTPM: 307.9
Samples: 4
Max nTPM: 663.9
Min nTPM: 99.2
RHH5309_R3676
316.4
RHH5217_R3589
151.9
RHH5246_R3618
99.2
RHH5275_R3647
663.9
Plasmablast nTPM: 259.1
Samples: 4
Max nTPM: 375.6
Min nTPM: 126.5
RHH5312_R3679
345.9
RHH5220_R3592
126.5
RHH5249_R3621
188.5
RHH5278_R3650
375.6
Switched memory B-cell nTPM: 259.6
Samples: 4
Max nTPM: 454.9
Min nTPM: 156.6
RHH5311_R3678
243.4
RHH5219_R3591
183.5
RHH5248_R3620
156.6
RHH5277_R3649
454.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
899.1
Schmiedel sample id
TPM
Naive B-cell TPM: 899.1
Samples: 91
Max TPM: 1314.1
Min TPM: 254.5
B_CELL_NAIVE_1
1314.1
B_CELL_NAIVE_2
1307.1
B_CELL_NAIVE_3
1304.3
B_CELL_NAIVE_4
1261.3
B_CELL_NAIVE_5
1243.1
B_CELL_NAIVE_6
1239.3
B_CELL_NAIVE_7
1233.5
B_CELL_NAIVE_8
1227.9
B_CELL_NAIVE_9
1218.6
B_CELL_NAIVE_10
1189.3
B_CELL_NAIVE_11
1168.3
B_CELL_NAIVE_12
1137.2
B_CELL_NAIVE_13
1129.9
B_CELL_NAIVE_14
1128.4
B_CELL_NAIVE_15
1125.9
B_CELL_NAIVE_16
1114.3
B_CELL_NAIVE_17
1111.1
B_CELL_NAIVE_18
1107.0
B_CELL_NAIVE_19
1101.8
B_CELL_NAIVE_20
1098.9
B_CELL_NAIVE_21
1097.8
B_CELL_NAIVE_22
1094.7
B_CELL_NAIVE_23
1093.9
B_CELL_NAIVE_24
1081.6
B_CELL_NAIVE_25
1070.3
B_CELL_NAIVE_26
1061.6
B_CELL_NAIVE_27
1057.6
B_CELL_NAIVE_28
1055.1
B_CELL_NAIVE_29
1044.0
B_CELL_NAIVE_30
1036.0
B_CELL_NAIVE_31
1029.9
B_CELL_NAIVE_32
1027.7
B_CELL_NAIVE_33
1025.4
B_CELL_NAIVE_34
1025.3
B_CELL_NAIVE_35
1019.1
B_CELL_NAIVE_36
1016.7
B_CELL_NAIVE_37
1009.5
B_CELL_NAIVE_38
994.8
B_CELL_NAIVE_39
977.3
B_CELL_NAIVE_40
967.7
B_CELL_NAIVE_41
959.2
B_CELL_NAIVE_42
956.8
B_CELL_NAIVE_43
928.3
B_CELL_NAIVE_44
914.8
B_CELL_NAIVE_45
908.8
B_CELL_NAIVE_46
905.0
B_CELL_NAIVE_47
897.1
B_CELL_NAIVE_48
889.8
B_CELL_NAIVE_49
883.8
B_CELL_NAIVE_50
883.6
B_CELL_NAIVE_51
880.1
B_CELL_NAIVE_52
879.3
B_CELL_NAIVE_53
877.4
B_CELL_NAIVE_54
862.1
B_CELL_NAIVE_55
861.3
B_CELL_NAIVE_56
853.3
B_CELL_NAIVE_57
853.2
B_CELL_NAIVE_58
851.1
B_CELL_NAIVE_59
843.3
B_CELL_NAIVE_60
831.8
B_CELL_NAIVE_61
812.5
B_CELL_NAIVE_62
780.2
B_CELL_NAIVE_63
778.5
B_CELL_NAIVE_64
774.9
B_CELL_NAIVE_65
760.1
B_CELL_NAIVE_66
751.6
B_CELL_NAIVE_67
746.1
B_CELL_NAIVE_68
745.2
B_CELL_NAIVE_69
745.0
B_CELL_NAIVE_70
725.1
B_CELL_NAIVE_71
716.7
B_CELL_NAIVE_72
716.0
B_CELL_NAIVE_73
702.8
B_CELL_NAIVE_74
688.9
B_CELL_NAIVE_75
675.9
B_CELL_NAIVE_76
654.3
B_CELL_NAIVE_77
651.8
B_CELL_NAIVE_78
648.2
B_CELL_NAIVE_79
639.5
B_CELL_NAIVE_80
616.3
B_CELL_NAIVE_81
596.3
B_CELL_NAIVE_82
573.8
B_CELL_NAIVE_83
568.1
B_CELL_NAIVE_84
534.1
B_CELL_NAIVE_85
514.8
B_CELL_NAIVE_86
489.9
B_CELL_NAIVE_87
463.1
B_CELL_NAIVE_88
444.4
B_CELL_NAIVE_89
419.6
B_CELL_NAIVE_90
360.6
B_CELL_NAIVE_91
254.5
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