A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1254.7
nTPM
Monaco:
110.3
nTPM
Schmiedel:
596.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1254.7
HPA sample
nTPM
NK-cell nTPM: 1254.6
Samples: 6
Max nTPM: 1597.1
Min nTPM: 661.3
P10809_1013
1281.4
P10809_1033
1597.1
P10809_1052
1292.7
P10809_1071
1205.6
P10809_1093
661.3
P10809_1103
1489.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.3
Monaco sample
nTPM
NK-cell nTPM: 110.3
Samples: 4
Max nTPM: 154.1
Min nTPM: 65.0
RHH5316_R3683
88.7
RHH5224_R3596
65.0
RHH5253_R3625
133.5
RHH5282_R3654
154.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
596.9
Schmiedel sample id
TPM
NK-cell TPM: 596.9
Samples: 90
Max TPM: 1139.9
Min TPM: 326.8
NK_1
1139.9
NK_2
871.2
NK_3
848.9
NK_4
848.8
NK_5
820.3
NK_6
814.9
NK_7
785.2
NK_8
779.7
NK_9
773.4
NK_10
762.3
NK_11
759.9
NK_12
758.9
NK_13
756.8
NK_14
752.0
NK_15
750.6
NK_16
740.1
NK_17
739.6
NK_18
739.3
NK_19
738.2
NK_20
720.6
NK_21
714.8
NK_22
705.6
NK_23
705.4
NK_24
704.9
NK_25
695.3
NK_26
695.1
NK_27
685.3
NK_28
684.5
NK_29
682.7
NK_30
676.2
NK_31
666.3
NK_32
663.5
NK_33
661.5
NK_34
649.1
NK_35
647.8
NK_36
645.5
NK_37
645.4
NK_38
623.3
NK_39
619.9
NK_40
616.3
NK_41
612.2
NK_42
610.3
NK_43
608.4
NK_44
592.5
NK_45
584.7
NK_46
584.0
NK_47
582.8
NK_48
580.9
NK_49
568.2
NK_50
567.4
NK_51
565.2
NK_52
556.4
NK_53
550.7
NK_54
541.6
NK_55
540.0
NK_56
539.4
NK_57
535.1
NK_58
533.6
NK_59
530.1
NK_60
528.2
NK_61
525.7
NK_62
525.2
NK_63
516.7
NK_64
506.0
NK_65
495.2
NK_66
495.1
NK_67
492.6
NK_68
491.5
NK_69
483.6
NK_70
476.4
NK_71
473.7
NK_72
467.3
NK_73
460.5
NK_74
457.9
NK_75
444.3
NK_76
440.1
NK_77
434.1
NK_78
427.7
NK_79
422.8
NK_80
414.2
NK_81
411.8
NK_82
407.4
NK_83
407.3
NK_84
384.3
NK_85
359.3
NK_86
356.1
NK_87
352.4
NK_88
337.5
NK_89
330.5
NK_90
326.8
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