A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1006.7
nTPM
Monaco:
214.8
nTPM
Schmiedel:
477.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1006.7
HPA sample
nTPM
Classical monocyte nTPM: 1006.7
Samples: 6
Max nTPM: 1417.1
Min nTPM: 711.3
P10809_1003
1417.1
P10809_1020
833.2
P10809_1039
711.3
P10809_1058
1031.3
P10809_1080
813.6
P10809_1107
1233.5
Intermediate monocyte nTPM: 876.7
Samples: 6
Max nTPM: 1428.3
Min nTPM: 447.2
P10809_1004
698.2
P10809_1023
915.9
P10809_1042
891.3
P10809_1061
447.2
P10809_1081
879.6
P10809_1108
1428.3
Non-classical monocyte nTPM: 712.0
Samples: 5
Max nTPM: 997.3
Min nTPM: 423.2
P10809_1005
771.7
P10809_1053
704.9
P10809_1072
423.2
P10809_1082
663.1
P10809_1109
997.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
214.8
Monaco sample
nTPM
Classical monocyte nTPM: 98.4
Samples: 4
Max nTPM: 140.9
Min nTPM: 64.8
RHH5313_R3680
140.9
RHH5221_R3593
91.6
RHH5250_R3622
64.8
RHH5279_R3651
96.2
Intermediate monocyte nTPM: 214.8
Samples: 4
Max nTPM: 281.6
Min nTPM: 139.5
RHH5314_R3681
206.2
RHH5222_R3594
281.6
RHH5251_R3623
231.7
RHH5280_R3652
139.5
Non-classical monocyte nTPM: 130.3
Samples: 4
Max nTPM: 182.3
Min nTPM: 58.9
RHH5315_R3682
182.3
RHH5223_R3595
120.1
RHH5252_R3624
159.8
RHH5281_R3653
58.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
477.3
Schmiedel sample id
TPM
Classical monocyte TPM: 477.3
Samples: 91
Max TPM: 750.8
Min TPM: 274.7
MONOCYTES_1
750.8
MONOCYTES_2
732.6
MONOCYTES_3
705.8
MONOCYTES_4
688.4
MONOCYTES_5
651.8
MONOCYTES_6
639.0
MONOCYTES_7
628.3
MONOCYTES_8
627.8
MONOCYTES_9
621.6
MONOCYTES_10
621.5
MONOCYTES_11
614.7
MONOCYTES_12
605.2
MONOCYTES_13
602.0
MONOCYTES_14
598.7
MONOCYTES_15
592.1
MONOCYTES_16
584.3
MONOCYTES_17
580.4
MONOCYTES_18
571.7
MONOCYTES_19
562.8
MONOCYTES_20
561.4
MONOCYTES_21
561.3
MONOCYTES_22
557.2
MONOCYTES_23
555.8
MONOCYTES_24
555.7
MONOCYTES_25
555.4
MONOCYTES_26
555.1
MONOCYTES_27
544.3
MONOCYTES_28
541.6
MONOCYTES_29
535.5
MONOCYTES_30
532.1
MONOCYTES_31
531.1
MONOCYTES_32
518.0
MONOCYTES_33
512.3
MONOCYTES_34
511.4
MONOCYTES_35
509.4
MONOCYTES_36
508.9
MONOCYTES_37
502.5
MONOCYTES_38
501.3
MONOCYTES_39
500.9
MONOCYTES_40
492.0
MONOCYTES_41
488.2
MONOCYTES_42
487.9
MONOCYTES_43
481.3
MONOCYTES_44
476.2
MONOCYTES_45
476.0
MONOCYTES_46
471.0
MONOCYTES_47
470.5
MONOCYTES_48
464.1
MONOCYTES_49
463.7
MONOCYTES_50
460.6
MONOCYTES_51
460.4
MONOCYTES_52
450.8
MONOCYTES_53
450.1
MONOCYTES_54
446.9
MONOCYTES_55
446.2
MONOCYTES_56
445.8
MONOCYTES_57
440.7
MONOCYTES_58
439.5
MONOCYTES_59
435.1
MONOCYTES_60
432.5
MONOCYTES_61
427.7
MONOCYTES_62
422.2
MONOCYTES_63
420.3
MONOCYTES_64
419.9
MONOCYTES_65
419.0
MONOCYTES_66
411.7
MONOCYTES_67
410.5
MONOCYTES_68
407.9
MONOCYTES_69
386.5
MONOCYTES_70
383.6
MONOCYTES_71
377.8
MONOCYTES_72
373.3
MONOCYTES_73
372.5
MONOCYTES_74
370.4
MONOCYTES_75
369.5
MONOCYTES_76
369.1
MONOCYTES_77
360.8
MONOCYTES_78
359.2
MONOCYTES_79
353.4
MONOCYTES_80
345.8
MONOCYTES_81
337.9
MONOCYTES_82
335.0
MONOCYTES_83
333.2
MONOCYTES_84
309.7
MONOCYTES_85
307.5
MONOCYTES_86
304.9
MONOCYTES_87
302.2
MONOCYTES_88
289.1
MONOCYTES_89
286.4
MONOCYTES_90
280.3
MONOCYTES_91
274.7
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Non-classical monocyte TPM: 368.0
Samples: 90
Max TPM: 739.4
Min TPM: 140.8
M2_1
739.4
M2_2
553.4
M2_3
516.6
M2_4
506.5
M2_5
502.1
M2_6
495.6
M2_7
492.9
M2_8
485.8
M2_9
485.5
M2_10
480.0
M2_11
479.3
M2_12
471.8
M2_13
469.4
M2_14
465.3
M2_15
461.5
M2_16
460.8
M2_17
460.5
M2_18
460.2
M2_19
451.2
M2_20
450.4
M2_21
441.8
M2_22
438.0
M2_23
437.1
M2_24
435.9
M2_25
431.4
M2_26
427.8
M2_27
420.7
M2_28
415.8
M2_29
408.0
M2_30
404.8
M2_31
404.7
M2_32
399.9
M2_33
396.3
M2_34
395.2
M2_35
394.8
M2_36
393.8
M2_37
393.7
M2_38
392.9
M2_39
392.1
M2_40
389.8
M2_41
386.9
M2_42
380.2
M2_43
375.4
M2_44
372.3
M2_45
367.0
M2_46
365.7
M2_47
361.7
M2_48
360.4
M2_49
355.7
M2_50
353.5
M2_51
351.9
M2_52
351.8
M2_53
350.4
M2_54
347.1
M2_55
342.7
M2_56
342.5
M2_57
337.8
M2_58
336.0
M2_59
330.5
M2_60
321.7
M2_61
319.9
M2_62
310.0
M2_63
309.9
M2_64
306.0
M2_65
300.4
M2_66
297.9
M2_67
297.0
M2_68
296.9
M2_69
295.1
M2_70
294.6
M2_71
292.3
M2_72
291.3
M2_73
289.9
M2_74
281.8
M2_75
273.0
M2_76
271.7
M2_77
270.4
M2_78
267.8
M2_79
261.3
M2_80
253.9
M2_81
251.5
M2_82
239.6
M2_83
235.7
M2_84
232.7
M2_85
228.3
M2_86
215.5
M2_87
210.0
M2_88
201.6
M2_89
192.5
M2_90
140.8
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