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BETA
  • SUMMARY

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  • BRAIN

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  • RPS7
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:1416.7 nTPM
Monaco:409.2 nTPM
Schmiedel:117.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1416.7
HPA sample nTPM
Memory B-cell
nTPM: 1416.8
Samples: 6

Max nTPM: 1516.2
Min nTPM: 1320.1
P10809_1017 1463.2
P10809_1025 1516.2
P10809_1044 1401.3
P10809_1063 1320.1
P10809_1092 1332.2
P10809_1105 1467.5
Naive B-cell
nTPM: 1177.4
Samples: 6

Max nTPM: 1296.0
Min nTPM: 1112.4
P10809_1011 1162.5
P10809_1029 1157.3
P10809_1048 1177.1
P10809_1067 1159.3
P10809_1091 1112.4
P10809_1104 1296.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

409.2
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 409.2
Samples: 4

Max nTPM: 734.9
Min nTPM: 160.3
RHH5310_R3677 378.8
RHH5218_R3590 160.3
RHH5247_R3619 734.9
RHH5276_R3648 362.9
Naive B-cell
nTPM: 344.6
Samples: 4

Max nTPM: 517.2
Min nTPM: 195.1
RHH5308_R3675 395.4
RHH5216_R3588 195.1
RHH5245_R3617 517.2
RHH5274_R3646 270.6
Non-switched memory B-cell
nTPM: 319.3
Samples: 4

Max nTPM: 461.9
Min nTPM: 192.7
RHH5309_R3676 461.9
RHH5217_R3589 192.7
RHH5246_R3618 245.5
RHH5275_R3647 377.3
Plasmablast
nTPM: 361.7
Samples: 4

Max nTPM: 448.9
Min nTPM: 295.5
RHH5312_R3679 448.9
RHH5220_R3592 295.5
RHH5249_R3621 351.9
RHH5278_R3650 350.4
Switched memory B-cell
nTPM: 357.0
Samples: 4

Max nTPM: 523.0
Min nTPM: 266.9
RHH5311_R3678 523.0
RHH5219_R3591 296.0
RHH5248_R3620 266.9
RHH5277_R3649 342.2

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

117.2
Schmiedel sample id TPM
Naive B-cell
TPM: 117.2
Samples: 91

Max TPM: 156.8
Min TPM: 47.1
B_CELL_NAIVE_1 156.8
B_CELL_NAIVE_2 144.6
B_CELL_NAIVE_3 139.7
B_CELL_NAIVE_4 138.3
B_CELL_NAIVE_5 137.1
B_CELL_NAIVE_6 135.3
B_CELL_NAIVE_7 134.4
B_CELL_NAIVE_8 133.2
B_CELL_NAIVE_9 132.2
B_CELL_NAIVE_10 131.9
B_CELL_NAIVE_11 131.4
B_CELL_NAIVE_12 131.1
B_CELL_NAIVE_13 130.9
B_CELL_NAIVE_14 130.8
B_CELL_NAIVE_15 130.4
B_CELL_NAIVE_16 129.3
B_CELL_NAIVE_17 129.2
B_CELL_NAIVE_18 128.4
B_CELL_NAIVE_19 128.0
B_CELL_NAIVE_20 127.8
B_CELL_NAIVE_21 127.0
B_CELL_NAIVE_22 126.9
B_CELL_NAIVE_23 126.7
B_CELL_NAIVE_24 126.2
B_CELL_NAIVE_25 126.0
B_CELL_NAIVE_26 124.9
B_CELL_NAIVE_27 124.8
B_CELL_NAIVE_28 124.5
B_CELL_NAIVE_29 124.3
B_CELL_NAIVE_30 124.0
B_CELL_NAIVE_31 123.8
B_CELL_NAIVE_32 123.2
B_CELL_NAIVE_33 122.9
B_CELL_NAIVE_34 122.4
B_CELL_NAIVE_35 121.9
B_CELL_NAIVE_36 121.7
B_CELL_NAIVE_37 121.4
B_CELL_NAIVE_38 121.1
B_CELL_NAIVE_39 120.5
B_CELL_NAIVE_40 120.2
B_CELL_NAIVE_41 119.8
B_CELL_NAIVE_42 119.6
B_CELL_NAIVE_43 119.3
B_CELL_NAIVE_44 118.9
B_CELL_NAIVE_45 118.9
B_CELL_NAIVE_46 118.6
B_CELL_NAIVE_47 118.5
B_CELL_NAIVE_48 118.4
B_CELL_NAIVE_49 117.9
B_CELL_NAIVE_50 117.7
B_CELL_NAIVE_51 117.0
B_CELL_NAIVE_52 116.7
B_CELL_NAIVE_53 115.3
B_CELL_NAIVE_54 115.2
B_CELL_NAIVE_55 115.1
B_CELL_NAIVE_56 114.9
B_CELL_NAIVE_57 114.1
B_CELL_NAIVE_58 113.9
B_CELL_NAIVE_59 113.4
B_CELL_NAIVE_60 113.3
B_CELL_NAIVE_61 113.3
B_CELL_NAIVE_62 113.2
B_CELL_NAIVE_63 111.7
B_CELL_NAIVE_64 111.6
B_CELL_NAIVE_65 111.5
B_CELL_NAIVE_66 111.4
B_CELL_NAIVE_67 111.4
B_CELL_NAIVE_68 111.0
B_CELL_NAIVE_69 109.8
B_CELL_NAIVE_70 109.7
B_CELL_NAIVE_71 109.3
B_CELL_NAIVE_72 107.9
B_CELL_NAIVE_73 106.8
B_CELL_NAIVE_74 105.7
B_CELL_NAIVE_75 105.3
B_CELL_NAIVE_76 105.1
B_CELL_NAIVE_77 104.7
B_CELL_NAIVE_78 103.4
B_CELL_NAIVE_79 102.1
B_CELL_NAIVE_80 102.1
B_CELL_NAIVE_81 102.1
B_CELL_NAIVE_82 101.0
B_CELL_NAIVE_83 100.7
B_CELL_NAIVE_84 100.1
B_CELL_NAIVE_85 100.0
B_CELL_NAIVE_86 99.5
B_CELL_NAIVE_87 97.1
B_CELL_NAIVE_88 92.3
B_CELL_NAIVE_89 90.9
B_CELL_NAIVE_90 76.6
B_CELL_NAIVE_91 47.1
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