A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1416.7
nTPM
Monaco:
409.2
nTPM
Schmiedel:
117.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1416.7
HPA sample
nTPM
Memory B-cell nTPM: 1416.8
Samples: 6
Max nTPM: 1516.2
Min nTPM: 1320.1
P10809_1017
1463.2
P10809_1025
1516.2
P10809_1044
1401.3
P10809_1063
1320.1
P10809_1092
1332.2
P10809_1105
1467.5
Naive B-cell nTPM: 1177.4
Samples: 6
Max nTPM: 1296.0
Min nTPM: 1112.4
P10809_1011
1162.5
P10809_1029
1157.3
P10809_1048
1177.1
P10809_1067
1159.3
P10809_1091
1112.4
P10809_1104
1296.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
409.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 409.2
Samples: 4
Max nTPM: 734.9
Min nTPM: 160.3
RHH5310_R3677
378.8
RHH5218_R3590
160.3
RHH5247_R3619
734.9
RHH5276_R3648
362.9
Naive B-cell nTPM: 344.6
Samples: 4
Max nTPM: 517.2
Min nTPM: 195.1
RHH5308_R3675
395.4
RHH5216_R3588
195.1
RHH5245_R3617
517.2
RHH5274_R3646
270.6
Non-switched memory B-cell nTPM: 319.3
Samples: 4
Max nTPM: 461.9
Min nTPM: 192.7
RHH5309_R3676
461.9
RHH5217_R3589
192.7
RHH5246_R3618
245.5
RHH5275_R3647
377.3
Plasmablast nTPM: 361.7
Samples: 4
Max nTPM: 448.9
Min nTPM: 295.5
RHH5312_R3679
448.9
RHH5220_R3592
295.5
RHH5249_R3621
351.9
RHH5278_R3650
350.4
Switched memory B-cell nTPM: 357.0
Samples: 4
Max nTPM: 523.0
Min nTPM: 266.9
RHH5311_R3678
523.0
RHH5219_R3591
296.0
RHH5248_R3620
266.9
RHH5277_R3649
342.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.2
Schmiedel sample id
TPM
Naive B-cell TPM: 117.2
Samples: 91
Max TPM: 156.8
Min TPM: 47.1
B_CELL_NAIVE_1
156.8
B_CELL_NAIVE_2
144.6
B_CELL_NAIVE_3
139.7
B_CELL_NAIVE_4
138.3
B_CELL_NAIVE_5
137.1
B_CELL_NAIVE_6
135.3
B_CELL_NAIVE_7
134.4
B_CELL_NAIVE_8
133.2
B_CELL_NAIVE_9
132.2
B_CELL_NAIVE_10
131.9
B_CELL_NAIVE_11
131.4
B_CELL_NAIVE_12
131.1
B_CELL_NAIVE_13
130.9
B_CELL_NAIVE_14
130.8
B_CELL_NAIVE_15
130.4
B_CELL_NAIVE_16
129.3
B_CELL_NAIVE_17
129.2
B_CELL_NAIVE_18
128.4
B_CELL_NAIVE_19
128.0
B_CELL_NAIVE_20
127.8
B_CELL_NAIVE_21
127.0
B_CELL_NAIVE_22
126.9
B_CELL_NAIVE_23
126.7
B_CELL_NAIVE_24
126.2
B_CELL_NAIVE_25
126.0
B_CELL_NAIVE_26
124.9
B_CELL_NAIVE_27
124.8
B_CELL_NAIVE_28
124.5
B_CELL_NAIVE_29
124.3
B_CELL_NAIVE_30
124.0
B_CELL_NAIVE_31
123.8
B_CELL_NAIVE_32
123.2
B_CELL_NAIVE_33
122.9
B_CELL_NAIVE_34
122.4
B_CELL_NAIVE_35
121.9
B_CELL_NAIVE_36
121.7
B_CELL_NAIVE_37
121.4
B_CELL_NAIVE_38
121.1
B_CELL_NAIVE_39
120.5
B_CELL_NAIVE_40
120.2
B_CELL_NAIVE_41
119.8
B_CELL_NAIVE_42
119.6
B_CELL_NAIVE_43
119.3
B_CELL_NAIVE_44
118.9
B_CELL_NAIVE_45
118.9
B_CELL_NAIVE_46
118.6
B_CELL_NAIVE_47
118.5
B_CELL_NAIVE_48
118.4
B_CELL_NAIVE_49
117.9
B_CELL_NAIVE_50
117.7
B_CELL_NAIVE_51
117.0
B_CELL_NAIVE_52
116.7
B_CELL_NAIVE_53
115.3
B_CELL_NAIVE_54
115.2
B_CELL_NAIVE_55
115.1
B_CELL_NAIVE_56
114.9
B_CELL_NAIVE_57
114.1
B_CELL_NAIVE_58
113.9
B_CELL_NAIVE_59
113.4
B_CELL_NAIVE_60
113.3
B_CELL_NAIVE_61
113.3
B_CELL_NAIVE_62
113.2
B_CELL_NAIVE_63
111.7
B_CELL_NAIVE_64
111.6
B_CELL_NAIVE_65
111.5
B_CELL_NAIVE_66
111.4
B_CELL_NAIVE_67
111.4
B_CELL_NAIVE_68
111.0
B_CELL_NAIVE_69
109.8
B_CELL_NAIVE_70
109.7
B_CELL_NAIVE_71
109.3
B_CELL_NAIVE_72
107.9
B_CELL_NAIVE_73
106.8
B_CELL_NAIVE_74
105.7
B_CELL_NAIVE_75
105.3
B_CELL_NAIVE_76
105.1
B_CELL_NAIVE_77
104.7
B_CELL_NAIVE_78
103.4
B_CELL_NAIVE_79
102.1
B_CELL_NAIVE_80
102.1
B_CELL_NAIVE_81
102.1
B_CELL_NAIVE_82
101.0
B_CELL_NAIVE_83
100.7
B_CELL_NAIVE_84
100.1
B_CELL_NAIVE_85
100.0
B_CELL_NAIVE_86
99.5
B_CELL_NAIVE_87
97.1
B_CELL_NAIVE_88
92.3
B_CELL_NAIVE_89
90.9
B_CELL_NAIVE_90
76.6
B_CELL_NAIVE_91
47.1
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