A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1035.7
nTPM
Monaco:
133.5
nTPM
Schmiedel:
86.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1035.7
HPA sample
nTPM
NK-cell nTPM: 1035.7
Samples: 6
Max nTPM: 1286.6
Min nTPM: 770.9
P10809_1013
997.9
P10809_1033
1174.7
P10809_1052
915.1
P10809_1071
1068.8
P10809_1093
770.9
P10809_1103
1286.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.5
Monaco sample
nTPM
NK-cell nTPM: 133.5
Samples: 4
Max nTPM: 158.9
Min nTPM: 116.5
RHH5316_R3683
158.9
RHH5224_R3596
124.9
RHH5253_R3625
116.5
RHH5282_R3654
133.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.6
Schmiedel sample id
TPM
NK-cell TPM: 86.6
Samples: 90
Max TPM: 115.3
Min TPM: 62.9
NK_1
115.3
NK_2
114.1
NK_3
108.5
NK_4
104.9
NK_5
104.3
NK_6
104.0
NK_7
101.2
NK_8
100.7
NK_9
100.5
NK_10
100.3
NK_11
100.1
NK_12
99.5
NK_13
98.2
NK_14
97.8
NK_15
97.4
NK_16
97.0
NK_17
95.3
NK_18
93.8
NK_19
93.7
NK_20
93.3
NK_21
93.0
NK_22
92.9
NK_23
92.7
NK_24
92.5
NK_25
91.9
NK_26
91.8
NK_27
91.6
NK_28
91.5
NK_29
91.1
NK_30
90.7
NK_31
90.5
NK_32
90.4
NK_33
90.1
NK_34
90.0
NK_35
89.9
NK_36
89.0
NK_37
88.7
NK_38
88.6
NK_39
88.1
NK_40
87.7
NK_41
87.5
NK_42
87.4
NK_43
87.3
NK_44
87.1
NK_45
86.9
NK_46
86.8
NK_47
86.7
NK_48
86.4
NK_49
85.0
NK_50
84.2
NK_51
83.9
NK_52
83.8
NK_53
83.5
NK_54
83.5
NK_55
82.7
NK_56
82.6
NK_57
82.6
NK_58
82.5
NK_59
82.2
NK_60
82.0
NK_61
81.7
NK_62
81.5
NK_63
81.2
NK_64
81.2
NK_65
80.8
NK_66
80.6
NK_67
79.1
NK_68
78.6
NK_69
78.1
NK_70
77.3
NK_71
77.2
NK_72
77.1
NK_73
77.0
NK_74
76.9
NK_75
76.5
NK_76
76.1
NK_77
75.8
NK_78
75.8
NK_79
75.7
NK_80
75.4
NK_81
75.2
NK_82
74.2
NK_83
73.8
NK_84
72.5
NK_85
71.4
NK_86
70.6
NK_87
70.1
NK_88
67.4
NK_89
65.8
NK_90
62.9
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