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  • TISSUE

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  • RPS7
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:833.3 nTPM
HPA Brain:238.0 nTPM
GTEx:833.3 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:418.2 nTPM
Mouse:561.5 nTPM
Allen mouse:12.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.0
Sample id Sample description nTPM
Amygdala
nTPM: 238.0
2695 Female, age 67, right hemisphere 283.0
2514 Male, age 75, right hemisphere 237.0
2517 Female, age 94, left hemisphere 234.8
2814 Male, age 76, right hemisphere 219.5
1987 Female, age 91, left hemisphere 215.7
Basal amygdala
nTPM: 191.2
2827 Female, age 67, right hemisphere 232.8
2609 Male, age 75, right hemisphere 217.7
2110 Male, age 80, left hemisphere 214.2
2685 Female, age 94, left hemisphere 194.2
2243 Female, age 91, right hemisphere 150.9
1955 Male, age 76, both hemispheres 137.5
Central amygdala
nTPM: 220.3
2826 Female, age 94, left hemisphere 320.9
2515 Male, age 75, right hemisphere 249.2
1905 Male, age 76, both hemispheres 185.6
2239 Male, age 80, left hemisphere 181.7
2701 Female, age 91, right hemisphere 164.0
Corticomedial amygdala
nTPM: 186.8
2829 Male, age 80, left hemisphere 219.9
2428 Male, age 75, right hemisphere 218.2
2429 Female, age 94, left hemisphere 187.0
2535 Female, age 67, right hemisphere 185.0
2242 Female, age 91, right hemisphere 168.7
2240 Male, age 76, both hemispheres 142.0
Lateral amygdala
nTPM: 219.1
2830 Female, age 67, right hemisphere 301.7
2516 Male, age 75, right hemisphere 274.3
2534 Female, age 94, left hemisphere 230.0
2256 Male, age 80, left hemisphere 186.5
2255 Female, age 91, right hemisphere 161.4
1883 Male, age 76, both hemispheres 160.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

833.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 833.3
Samples: 181

Max nTPM: 2537.8
Min nTPM: 474.4
Std nTPM: 276.8
Median nTPM: 780.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2537.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2115.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1957.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1853.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1616.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1521.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1436.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1433.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1427.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1308.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1194.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1170.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1159.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1135.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1098.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1088.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1064.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1050.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1048.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1043.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1040.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1035.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1030.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1030.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1024.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1024.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1018.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1011.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1004.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 989.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 987.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 985.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 973.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 961.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 957.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 952.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 952.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 952.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 948.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 945.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 943.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 932.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 927.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 923.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 923.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 918.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 913.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 898.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 895.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 891.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 891.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 884.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 884.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 881.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 875.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 866.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 855.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 854.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 853.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 850.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 849.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 848.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 847.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 846.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 844.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 842.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 834.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 834.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 832.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 830.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 826.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 823.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 821.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 818.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 817.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 814.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 812.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 811.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 808.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 805.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 801.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 801.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 798.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 798.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 792.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 791.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 783.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 783.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 781.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 781.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 780.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 780.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 780.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 777.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 773.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 772.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 771.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 770.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 770.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 767.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 762.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 761.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 757.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 754.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 750.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 749.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 749.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 747.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 746.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 746.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 741.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 738.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 737.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 734.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 734.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 723.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 722.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 720.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 717.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 716.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 715.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 711.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 703.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 701.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 700.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 696.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 689.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 689.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 686.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 686.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 685.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 685.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 682.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 681.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 680.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 676.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 672.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 672.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 666.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 665.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 660.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 651.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 648.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 648.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 646.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 644.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 643.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 643.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 642.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 633.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 631.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 620.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 617.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 615.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 614.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 612.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 610.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 609.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 609.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 600.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 596.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 596.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 588.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 586.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 584.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 584.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 581.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 572.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 567.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 560.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 560.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 546.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 541.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 534.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 526.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 520.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 499.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 493.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 484.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 480.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 474.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 14.9
FF:10151-102I7 76 years, female 14.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

418.2
Pig sample Sample description nTPM
Amygdala
nTPM: 418.2
Samples: 4

Max nTPM: 507.9
Min nTPM: 246.3
Sample A Female 507.7
Sample B Female 507.9
Sample C Male 411.0
Sample D Male 246.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

561.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 561.5
Samples: 4

Max nTPM: 599.2
Min nTPM: 522.7
Sample A Male 522.7
Sample B Male 599.2
Sample C Female 575.2
Sample D Female 548.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.9
68076526 Antisense, RP_040923_02_D09, Mouse strain C57BL/6J (56 days, male) 12.9

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