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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:996.4 nTPM
HPA:663.2 nTPM
GTEx:996.4 nTPM
FANTOM5:36.6 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA056586
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

663.2
overview
Male, age 65
Small intestine sample 232
nTPM: 792.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 637.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 626
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 596.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

996.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 996.4
Samples: 207

Max nTPM: 2415.8
Min nTPM: 548.8
Std nTPM: 271.0
Median nTPM: 963.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2415.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2210.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1840.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1827.1
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1766.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1730.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1654.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1499.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1494.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1468.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1447.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1435.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 1405.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1399.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1398.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1396.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1385.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1375.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1370.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1366.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1308.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1305.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1305.2
GTEX-1192X-2526-SM-59868 50-59 years, male 1304.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1276.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1260.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1259.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1237.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1212.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1209.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1202.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1201.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1196.2
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1195.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1182.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1182.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1181.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1170.0
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1166.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1152.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1150.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1146.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1144.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1144.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1130.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1126.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1126.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1123.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1123.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1122.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1118.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1113.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1111.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1106.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1102.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1101.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1098.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1094.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1092.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1083.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1080.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1076.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1074.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1068.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1068.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1067.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1065.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1064.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1057.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1056.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1055.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1053.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1046.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1044.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1043.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1037.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1032.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1024.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1023.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1017.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1015.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1008.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1001.8
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1000.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 999.9
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 998.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 991.7
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 990.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 989.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 983.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 979.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 978.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 977.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 977.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 977.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 977.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 974.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 973.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 969.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 967.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 966.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 964.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 963.3
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 963.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 960.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 959.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 958.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 953.8
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 953.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 950.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 947.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 945.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 941.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 939.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 938.0
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 935.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 933.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 927.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 925.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 913.7
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 912.0
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 911.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 907.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 904.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 904.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 902.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 902.2
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 898.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 885.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 883.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 882.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 882.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 881.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 880.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 879.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 877.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 876.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 874.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 871.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 870.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 859.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 856.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 854.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 845.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 841.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 837.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 836.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 835.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 830.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 828.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 825.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 824.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 819.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 819.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 819.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 817.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 811.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 810.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 807.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 804.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 802.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 802.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 801.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 796.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 788.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 787.4
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 786.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 785.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 783.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 780.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 778.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 777.3
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 762.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 760.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 759.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 758.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 749.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 748.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 745.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 743.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 737.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 732.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 732.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 727.1
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 709.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 704.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 701.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 691.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 689.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 687.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 681.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 681.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 680.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 679.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 678.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 676.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 670.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 661.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 645.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 628.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 619.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 606.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 604.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 579.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 566.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 558.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 548.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

36.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 36.6
FF:10024-101D6 15,40,85 years, mixed 36.6

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