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  • SUMMARY

  • TISSUE

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  • RPS7
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:602.6 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:362.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA056586
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

602.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 602.6
Samples: 300

Max nTPM: 1508.6
Min nTPM: 350.9
Std nTPM: 154.4
Median nTPM: 585.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1508.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1164.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1146.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1139.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1057.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1043.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1036.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1023.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1014.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 998.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 969.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 933.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 910.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 905.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 879.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 860.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 852.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 844.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 841.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 835.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 817.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 817.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 812.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 806.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 804.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 799.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 788.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 785.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 785.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 781.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 775.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 766.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 761.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 760.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 758.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 755.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 755.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 752.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 746.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 745.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 743.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 743.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 740.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 739.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 735.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 733.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 731.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 729.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 727.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 725.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 717.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 714.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 714.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 713.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 713.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 711.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 709.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 704.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 704.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 696.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 693.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 692.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 690.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 690.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 689.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 689.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 689.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 687.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 685.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 684.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 684.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 681.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 681.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 680.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 678.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 676.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 673.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 672.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 669.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 667.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 667.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 665.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 659.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 659.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 656.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 654.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 653.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 649.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 646.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 645.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 645.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 644.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 644.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 644.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 644.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 643.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 643.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 642.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 640.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 638.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 637.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 636.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 636.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 636.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 636.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 633.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 633.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 630.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 630.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 628.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 621.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 621.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 620.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 620.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 618.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 617.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 617.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 617.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 617.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 616.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 615.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 615.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 615.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 611.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 609.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 609.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 608.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 607.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 607.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 606.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 605.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 604.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 603.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 602.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 602.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 601.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 601.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 597.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 596.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 593.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 592.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 591.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 591.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 591.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 591.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 590.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 589.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 589.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 586.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 586.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 583.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 583.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 582.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 581.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 580.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 579.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 578.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 577.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 574.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 573.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 572.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 571.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 571.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 571.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 568.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 564.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 563.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 562.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 561.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 560.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 559.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 559.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 559.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 558.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 555.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 555.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 554.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 553.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 553.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 552.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 551.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 549.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 549.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 548.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 546.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 545.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 543.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 543.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 542.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 541.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 537.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 537.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 536.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 535.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 532.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 529.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 528.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 527.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 526.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 526.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 525.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 523.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 521.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 521.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 520.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 519.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 518.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 517.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 517.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 517.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 517.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 515.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 515.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 512.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 511.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 510.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 510.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 510.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 509.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 507.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 507.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 504.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 498.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 497.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 495.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 493.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 493.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 493.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 491.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 490.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 489.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 488.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 488.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 487.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 484.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 484.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 483.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 483.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 481.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 476.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 473.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 472.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 472.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 468.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 466.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 464.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 464.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 462.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 462.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 461.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 457.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 456.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 455.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 453.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 452.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 450.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 446.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 446.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 445.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 445.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 444.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 444.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 442.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 442.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 441.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 440.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 438.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 436.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 435.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 432.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 431.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 429.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 428.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 425.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 420.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 420.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 419.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 418.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 417.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 415.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 415.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 410.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 409.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 408.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 408.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 408.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 407.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 405.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 405.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 404.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 403.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 401.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 394.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 380.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 375.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 373.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 369.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 364.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 355.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 350.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.5
FF:10164-103B2 76 years, female 23.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

362.5
Pig sample Sample description nTPM
Caudate
nTPM: 362.5
Samples: 4

Max nTPM: 408.4
Min nTPM: 316.9
Sample A Female 358.5
Sample B Female 408.4
Sample C Male 366.3
Sample D Male 316.9

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