MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:30.1 nTPM
GTEx:22.3 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:57.1 nTPM
Mouse:19.2 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.2
2019 Male, age 18, unknown 37.6
2411 Female, age 72, unknown 29.7
2586 Male, age 75, left hemisphere 29.4
2666 Male, age 74, left hemisphere 27.9
1833 Male, age 53, unknown 27.4
2828 Female, age 72, unknown 27.4
1870 Female, age 42, unknown 27.0
1827 Male, age 72, unknown 26.3
2219 Male, age 76, both hemispheres 25.5
1830 Male, age 51, unknown 23.6
Dorsal raphe nucleus
nTPM: 27.4
1828 Male, age 53, unknown 28.0
2047 Male, age 72, unknown 28.0
2016 Female, age 72, unknown 27.4
2298 Female, age 72, unknown 27.4
2750 Male, age 76, both hemispheres 26.3
Inferior colliculus
nTPM: 24.9
1890 Male, age 53, unknown 27.3
2097 Female, age 72, unknown 26.5
1848 Female, age 42, unknown 23.4
2849 Male, age 72, unknown 22.3
Median raphe nucleus
nTPM: 25.8
2220 Male, age 76, midline 25.8
Periaquaductal grey, anterior
nTPM: 28.3
1795 Male, age 51, unknown 28.8
1947 Male, age 18, unknown 28.1
2502 Female, age 75, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 23.4
1831 Male, age 72, unknown 27.5
2464 Female, age 72, unknown 24.1
1840 Male, age 53, unknown 21.1
2850 Male, age 76, both hemispheres 21.0
Periaquaductal grey, lateral
nTPM: 25.5
2272 Male, age 74, both hemispheres 27.4
2053 Male, age 18, unknown 25.8
2140 Male, age 76, both hemispheres 23.5
Pretectal area
nTPM: 28.8
2007 Male, age 72, unknown 35.0
1817 Female, age 42, unknown 34.3
1816 Male, age 51, unknown 31.7
1815 Male, age 53, unknown 29.7
1944 Female, age 72, unknown 29.7
2667 Female, age 75, unknown 28.4
2273 Male, age 74, both hemispheres 28.3
2407 Male, age 75, both hemispheres 27.9
2224 Female, age 72, unknown 26.2
2825 Male, age 18, unknown 23.3
2316 Male, age 76, right hemisphere 22.0
Red nucleus
nTPM: 28.2
2785 Male, age 18, unknown 33.2
1865 Male, age 51, unknown 32.0
1821 Female, age 72, unknown 31.7
1904 Male, age 53, unknown 29.2
2503 Female, age 72, unknown 29.1
2725 Female, age 75, unknown 27.6
2769 Male, age 72, unknown 27.5
1954 Female, age 42, unknown 26.6
2227 Male, age 72, unknown 25.8
2823 Male, age 76, right hemisphere 25.7
2584 Male, age 75, left hemisphere 25.5
2588 Male, age 74, left hemisphere 24.8
Substantia nigra
nTPM: 30.1
1916 Female, age 42, unknown 36.6
2665 Male, age 74, both hemispheres 36.2
1851 Male, age 51, unknown 34.6
2590 Female, age 75, unknown 32.6
1889 Female, age 72, unknown 29.8
1941 Male, age 53, unknown 29.2
2583 Male, age 75, right hemisphere 27.7
2409 Female, age 72, unknown 26.4
2241 Male, age 72, unknown 25.1
2699 Male, age 18, unknown 23.1
Superior colliculus
nTPM: 27.1
2587 Male, age 74, left hemisphere 30.9
2664 Male, age 75, both hemispheres 30.7
2087 Female, age 72, unknown 29.0
1913 Female, age 42, unknown 28.5
1995 Male, age 72, unknown 28.4
1796 Male, age 53, unknown 26.8
2261 Male, age 18, unknown 26.5
2668 Female, age 75, unknown 25.4
1839 Male, age 51, unknown 23.0
1895 Male, age 76, right hemisphere 21.7
Ventral tegmental area
nTPM: 26.6
2218 Male, age 76, both hemispheres 30.1
2410 Female, age 72, unknown 29.2
1915 Female, age 42, unknown 27.2
2021 Male, age 53, unknown 25.2
1942 Male, age 51, unknown 24.5
2223 Female, age 72, unknown 23.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 183

Max nTPM: 40.0
Min nTPM: 5.8
Std nTPM: 5.5
Median nTPM: 21.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 40.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 34.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 34.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 33.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 33.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 32.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 32.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 31.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.1
Samples: 4

Max nTPM: 67.8
Min nTPM: 48.6
Sample A Female 67.8
Sample B Female 48.6
Sample C Male 58.6
Sample D Male 53.3
Midbrain
nTPM: 56.8
Samples: 4

Max nTPM: 75.7
Min nTPM: 43.0
Sample A Female 75.7
Sample B Female 48.9
Sample C Male 59.5
Sample D Male 43.0
Periaqueductal gray
nTPM: 41.7
Samples: 3

Max nTPM: 46.2
Min nTPM: 36.5
Sample B Female 42.3
Sample C Male 46.2
Sample D Male 36.5
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 58.4
Min nTPM: 51.8
Sample A Female 58.4
Sample B Female 55.3
Sample C Male 58.4
Sample D Male 51.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 22.3
Min nTPM: 17.7
Sample A Male 18.5
Sample B Male 18.2
Sample C Female 22.3
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69169893 Antisense, RP_050321_04_D07, Mouse strain C57BL/6J (56 days, male) 1.3

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