BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:487.2 nTPM
HPA Brain:465.5 nTPM
GTEx:487.2 nTPM
FANTOM5:248.9 Scaled Tags Per Million
Mouse:458.7 nTPM
Rat:336.5 nTPM
Pig:56.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 465.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 396.2
2019 Male, age 18, unknown 566.6
2666 Male, age 74, left hemisphere 488.4
2828 Female, age 72, unknown 439.2
2586 Male, age 75, left hemisphere 429.4
2411 Female, age 72, unknown 359.7
1827 Male, age 72, unknown 353.6
1870 Female, age 42, unknown 344.8
1833 Male, age 53, unknown 340.7
1830 Male, age 51, unknown 338.5
2219 Male, age 76, both hemispheres 301.5
Dorsal raphe nucleus
nTPM: 361.5
2750 Male, age 76, both hemispheres 392.6
2298 Female, age 72, unknown 382.7
1828 Male, age 53, unknown 372.0
2047 Male, age 72, unknown 353.7
2016 Female, age 72, unknown 306.5
Inferior colliculus
nTPM: 359.7
2097 Female, age 72, unknown 431.3
1890 Male, age 53, unknown 372.0
1848 Female, age 42, unknown 339.1
2849 Male, age 72, unknown 296.3
Median raphe nucleus
nTPM: 379.2
2220 Male, age 76, midline 379.2
Periaquaductal grey, anterior
nTPM: 399.9
2502 Female, age 75, unknown 453.5
1795 Male, age 51, unknown 406.6
1947 Male, age 18, unknown 339.6
Periaquaductal grey, dorsal
nTPM: 289.7
2464 Female, age 72, unknown 324.6
1831 Male, age 72, unknown 283.4
2850 Male, age 76, both hemispheres 278.3
1840 Male, age 53, unknown 272.3
Periaquaductal grey, lateral
nTPM: 298.8
2272 Male, age 74, both hemispheres 322.9
2140 Male, age 76, both hemispheres 299.3
2053 Male, age 18, unknown 274.2
Pretectal area
nTPM: 407.9
1817 Female, age 42, unknown 623.5
2007 Male, age 72, unknown 606.0
1944 Female, age 72, unknown 508.5
1816 Male, age 51, unknown 477.9
1815 Male, age 53, unknown 448.5
2667 Female, age 75, unknown 390.9
2224 Female, age 72, unknown 326.2
2316 Male, age 76, right hemisphere 315.9
2825 Male, age 18, unknown 280.7
2273 Male, age 74, both hemispheres 264.4
2407 Male, age 75, both hemispheres 244.5
Red nucleus
nTPM: 465.5
2588 Male, age 74, left hemisphere 597.2
2785 Male, age 18, unknown 563.5
1904 Male, age 53, unknown 493.6
1954 Female, age 42, unknown 484.7
1821 Female, age 72, unknown 477.3
2503 Female, age 72, unknown 469.8
2227 Male, age 72, unknown 459.1
2769 Male, age 72, unknown 456.9
1865 Male, age 51, unknown 453.1
2823 Male, age 76, right hemisphere 424.9
2725 Female, age 75, unknown 391.6
2584 Male, age 75, left hemisphere 314.8
Substantia nigra
nTPM: 414.8
1916 Female, age 42, unknown 531.4
2665 Male, age 74, both hemispheres 516.7
1889 Female, age 72, unknown 495.1
1851 Male, age 51, unknown 466.4
2590 Female, age 75, unknown 397.1
1941 Male, age 53, unknown 383.5
2241 Male, age 72, unknown 361.4
2699 Male, age 18, unknown 344.4
2409 Female, age 72, unknown 339.4
2583 Male, age 75, right hemisphere 312.3
Superior colliculus
nTPM: 367.0
2087 Female, age 72, unknown 501.2
2261 Male, age 18, unknown 422.2
1796 Male, age 53, unknown 415.6
2668 Female, age 75, unknown 379.7
1995 Male, age 72, unknown 362.6
1913 Female, age 42, unknown 354.2
2587 Male, age 74, left hemisphere 342.3
2664 Male, age 75, both hemispheres 313.5
1839 Male, age 51, unknown 294.2
1895 Male, age 76, right hemisphere 284.2
Ventral tegmental area
nTPM: 375.5
2218 Male, age 76, both hemispheres 405.9
2410 Female, age 72, unknown 402.5
1915 Female, age 42, unknown 399.0
1942 Male, age 51, unknown 372.4
2223 Female, age 72, unknown 358.8
2021 Male, age 53, unknown 314.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 487.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 487.2
Samples: 183

Max nTPM: 2297.2
Min nTPM: 221.9
Std nTPM: 243.3
Median nTPM: 435.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2297.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1645.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1318.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1238.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1204.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1176.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 990.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 943.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 877.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 875.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 859.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 248.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 248.9
FF:10158-103A5 76 years, female 248.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 56.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.8
Samples: 3

Max nTPM: 52.1
Min nTPM: 38.7
Sample A Female 52.1
Sample B Female 38.7
Sample C Male 46.5
Midbrain
nTPM: 47.4
Samples: 3

Max nTPM: 61.0
Min nTPM: 38.6
Sample B Female 38.6
Sample C Male 61.0
Sample D Male 42.5
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 42.7
Min nTPM: 35.4
Sample B Female 36.0
Sample C Male 42.7
Sample D Male 35.4
Superior colliculi
nTPM: 56.5
Samples: 4

Max nTPM: 61.1
Min nTPM: 52.0
Sample A Female 59.9
Sample B Female 52.0
Sample C Male 61.1
Sample D Male 53.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 458.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 458.8
Samples: 4

Max nTPM: 464.3
Min nTPM: 455.1
Sample A 455.1
Sample B 459.9
Sample C 455.7
Sample D 464.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 336.5
Rat sample Sample description nTPM
Midbrain
nTPM: 336.5
Samples: 4

Max nTPM: 349.6
Min nTPM: 314.1
Sample A 349.6
Sample A 347.0
Sample A 335.4
Sample A 314.1

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