MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA Brain:23.4 nTPM
GTEx:30.4 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:33.7 nTPM
Mouse:33.0 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.4
1827 Male, age 72, unknown 22.5
1870 Female, age 42, unknown 20.2
2219 Male, age 76, both hemispheres 18.4
2411 Female, age 72, unknown 17.7
1833 Male, age 53, unknown 16.8
2828 Female, age 72, unknown 16.5
2666 Male, age 74, left hemisphere 16.0
1830 Male, age 51, unknown 15.9
2019 Male, age 18, unknown 15.1
2586 Male, age 75, left hemisphere 15.1
Dorsal raphe nucleus
nTPM: 19.1
2298 Female, age 72, unknown 22.3
2750 Male, age 76, both hemispheres 19.3
2047 Male, age 72, unknown 18.8
1828 Male, age 53, unknown 18.7
2016 Female, age 72, unknown 16.5
Inferior colliculus
nTPM: 21.5
2849 Male, age 72, unknown 25.0
1848 Female, age 42, unknown 22.3
2097 Female, age 72, unknown 22.0
1890 Male, age 53, unknown 16.5
Median raphe nucleus
nTPM: 23.4
2220 Male, age 76, midline 23.4
Periaquaductal grey, anterior
nTPM: 20.5
1947 Male, age 18, unknown 21.8
1795 Male, age 51, unknown 21.7
2502 Female, age 75, unknown 17.9
Periaquaductal grey, dorsal
nTPM: 21.7
1840 Male, age 53, unknown 25.8
2850 Male, age 76, both hemispheres 24.4
1831 Male, age 72, unknown 19.1
2464 Female, age 72, unknown 17.6
Periaquaductal grey, lateral
nTPM: 21.4
2140 Male, age 76, both hemispheres 21.5
2053 Male, age 18, unknown 21.3
2272 Male, age 74, both hemispheres 21.3
Pretectal area
nTPM: 20.8
2224 Female, age 72, unknown 24.8
1816 Male, age 51, unknown 22.1
2007 Male, age 72, unknown 22.0
1817 Female, age 42, unknown 21.8
2825 Male, age 18, unknown 21.8
1815 Male, age 53, unknown 21.6
1944 Female, age 72, unknown 20.7
2273 Male, age 74, both hemispheres 20.2
2407 Male, age 75, both hemispheres 18.7
2316 Male, age 76, right hemisphere 18.3
2667 Female, age 75, unknown 16.5
Red nucleus
nTPM: 15.4
2725 Female, age 75, unknown 21.4
2588 Male, age 74, left hemisphere 17.7
2503 Female, age 72, unknown 16.4
1954 Female, age 42, unknown 16.3
2584 Male, age 75, left hemisphere 16.3
1821 Female, age 72, unknown 15.1
2823 Male, age 76, right hemisphere 15.1
2785 Male, age 18, unknown 14.6
2769 Male, age 72, unknown 13.8
2227 Male, age 72, unknown 13.1
1865 Male, age 51, unknown 12.9
1904 Male, age 53, unknown 12.5
Substantia nigra
nTPM: 16.6
1889 Female, age 72, unknown 21.1
2590 Female, age 75, unknown 18.8
2241 Male, age 72, unknown 18.3
1916 Female, age 42, unknown 17.8
1941 Male, age 53, unknown 17.7
2699 Male, age 18, unknown 16.6
1851 Male, age 51, unknown 16.2
2409 Female, age 72, unknown 14.0
2583 Male, age 75, right hemisphere 13.5
2665 Male, age 74, both hemispheres 12.0
Superior colliculus
nTPM: 18.0
1839 Male, age 51, unknown 21.4
2587 Male, age 74, left hemisphere 21.0
1895 Male, age 76, right hemisphere 20.0
2087 Female, age 72, unknown 19.9
1796 Male, age 53, unknown 19.3
2261 Male, age 18, unknown 18.8
1913 Female, age 42, unknown 15.9
2668 Female, age 75, unknown 15.8
1995 Male, age 72, unknown 14.3
2664 Male, age 75, both hemispheres 13.6
Ventral tegmental area
nTPM: 18.0
2021 Male, age 53, unknown 19.9
2223 Female, age 72, unknown 18.5
2218 Male, age 76, both hemispheres 18.3
1915 Female, age 42, unknown 17.8
1942 Male, age 51, unknown 17.1
2410 Female, age 72, unknown 16.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 183

Max nTPM: 59.5
Min nTPM: 17.9
Std nTPM: 6.4
Median nTPM: 30.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 59.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 56.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 46.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 44.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 43.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 42.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 42.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 41.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 41.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.5
FF:10158-103A5 76 years, female 43.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.7
Samples: 4

Max nTPM: 45.7
Min nTPM: 16.0
Sample A Female 45.7
Sample B Female 26.1
Sample C Male 38.9
Sample D Male 16.0
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 38.1
Min nTPM: 25.8
Sample A Female 25.8
Sample B Female 34.9
Sample C Male 35.7
Sample D Male 38.1
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 38.2
Min nTPM: 27.0
Sample B Female 27.0
Sample C Male 38.2
Sample D Male 29.0
Superior colliculi
nTPM: 32.4
Samples: 4

Max nTPM: 40.5
Min nTPM: 23.9
Sample A Female 40.5
Sample B Female 23.9
Sample C Male 33.0
Sample D Male 32.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.1
Samples: 4

Max nTPM: 34.8
Min nTPM: 31.8
Sample A Male 31.8
Sample B Male 34.8
Sample C Female 32.4
Sample D Female 33.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
68193054 Antisense, RP_040826_01_E12, Mouse strain C57BL/6J (56 days, male) 5.9

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