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BETA
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  • CFL1
EVOLUTIONARY PONS Show tissue menu
BRAIN28 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM10 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE12 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CORPUS CALLOSUM DORSAL ROOT GANGLION ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
MOTOR AND PREFRONTAL CORTEX OCCIPITAL CORTEX OLFACTORY BULB PONS RETROSPLENIAL AND CINGULATE CORTEX SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES PERICARDIUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PONS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:645.2 nTPM
FANTOM5:1156.2 Scaled Tags Per Million
Mouse:471.0 nTPM
Rat:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

PONS - HPA Brain Stereo-seq

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

645.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 534.5
2188 Female, age 91, both hemispheres 589.1
2301 Female, age 85, both hemispheres 552.5
2090 Male, age 80, both hemispheres 549.1
1984 Male, age 76, both hemispheres 447.5
Dorsal cochlear nucleus
nTPM: 517.0
2187 Female, age 91, both hemispheres 594.9
2802 Male, age 74, right hemisphere 517.4
2370 Male, age 61, both hemispheres 505.7
2378 Male, age 80, both hemispheres 494.1
2058 Male, age 76, both hemispheres 473.0
Dorsal tegmental nucleus
nTPM: 554.1
2358 Male, age 61, both hemispheres 701.6
2083 Male, age 80, both hemispheres 567.1
2326 Male, age 74, both hemispheres 512.7
1936 Male, age 76, left hemisphere 435.1
Dorsolateral tegmental area
nTPM: 535.3
2337 Male, age 61, both hemispheres 711.3
2654 Male, age 80, both hemispheres 560.9
2751 Female, age 85, both hemispheres 515.7
2360 Male, age 74, both hemispheres 462.0
2141 Male, age 76, both hemispheres 426.6
Kolliker-Fuse nucleus
nTPM: 572.5
2163 Male, age 80, both hemispheres 601.8
2793 Female, age 91, left hemisphere 585.9
2315 Male, age 76, right hemisphere 529.7
Lateral lemniscal nuclei
nTPM: 522.1
2169 Male, age 76, both hemispheres 603.0
2746 Female, age 85, left hemisphere 565.4
2453 Male, age 74, right hemisphere 522.5
2320 Female, age 91, left hemisphere 464.3
2036 Male, age 80, both hemispheres 455.2
Lateral parabrachial nucleus
nTPM: 543.7
2139 Female, age 85, right hemisphere 621.3
2013 Male, age 80, both hemispheres 556.6
2792 Male, age 76, both hemispheres 541.9
2790 Male, age 61, both hemispheres 455.1
Lateral vestibular nucleus
nTPM: 560.3
2311 Male, age 80, both hemispheres 566.6
2184 Male, age 76, both hemispheres 554.0
Locus coeruleus
nTPM: 571.9
2123 Female, age 91, both hemispheres 723.9
2014 Male, age 55, unknown 609.4
2720 Male, age 74, both hemispheres 606.0
1980 Male, age 76, both hemispheres 552.6
2162 Male, age 80, both hemispheres 531.5
2317 Female, age 72, unknown 506.4
2788 Male, age 74, unknown 473.2
Medial parabrachial nucleus
nTPM: 531.5
2170 Female, age 91, both hemispheres 644.9
2854 Male, age 80, both hemispheres 561.3
2156 Male, age 61, both hemispheres 489.6
2786 Male, age 76, both hemispheres 486.2
2463 Female, age 85, right hemisphere 475.7
Medial periolivary nuclei
nTPM: 571.8
2171 Female, age 85, both hemispheres 665.2
2063 Male, age 76, both hemispheres 622.5
2791 Male, age 74, right hemisphere 550.9
2081 Male, age 80, both hemispheres 546.0
2458 Female, age 91, both hemispheres 474.6
Motor facial nucleus
nTPM: 553.5
2365 Male, age 74, right hemisphere 644.3
2062 Male, age 76, both hemispheres 633.8
2697 Female, age 85, both hemispheres 584.4
2126 Male, age 61, both hemispheres 542.4
2327 Male, age 80, both hemispheres 471.5
2795 Female, age 91, both hemispheres 444.3
Motor trigeminal nucleus
nTPM: 516.9
2335 Male, age 61, both hemispheres 586.4
2560 Male, age 74, both hemispheres 549.3
2079 Male, age 80, both hemispheres 543.4
2309 Male, age 76, both hemispheres 457.4
2321 Female, age 91, both hemispheres 447.9
Nuclei of the trapezoid body
nTPM: 590.7
2159 Male, age 61, both hemispheres 698.7
2735 Female, age 85, both hemispheres 625.7
1983 Male, age 76, both hemispheres 624.1
2166 Male, age 80, both hemispheres 560.2
2368 Female, age 91, both hemispheres 444.7
Nucleus raphe magnus
nTPM: 589.0
2160 Male, age 61, both hemispheres 761.1
2172 Female, age 85, both hemispheres 647.6
2455 Male, age 74, both hemispheres 589.7
2051 Male, age 76, both hemispheres 536.7
2328 Male, age 80, both hemispheres 515.3
2459 Female, age 91, both hemispheres 483.6
Paramedian reticular nucleus
nTPM: 542.9
2050 Female, age 85, both hemispheres 615.0
2057 Male, age 80, both hemispheres 573.0
2313 Male, age 61, both hemispheres 532.7
2052 Male, age 76, both hemispheres 450.8
Pedunculopontine tegmental nucleus
nTPM: 547.4
2338 Male, age 61, both hemispheres 650.6
2334 Male, age 80, both hemispheres 540.4
1921 Female, age 85, both hemispheres 451.3
Pontine nuclei
nTPM: 645.2
1863 Male, age 55, unknown 783.6
2787 Female, age 85, both hemispheres 764.2
2727 Male, age 61, right hemisphere 700.1
2109 Female, age 72, unknown 630.1
2454 Male, age 74, left hemisphere 603.0
1968 Male, age 76, left hemisphere 588.1
2115 Male, age 80, left hemisphere 570.0
2319 Female, age 91, both hemispheres 522.8
Pontine raphe nucleus
nTPM: 521.8
2122 Female, age 85, midline 573.5
2853 Male, age 76, midline 470.1
Posteroventral cochlear nucleus
nTPM: 525.6
2070 Male, age 76, both hemispheres 559.5
2135 Female, age 91, both hemispheres 533.9
2752 Female, age 85, both hemispheres 533.1
2341 Male, age 80, both hemispheres 531.0
2371 Male, age 61, both hemispheres 470.5
Principal sensory trigeminal nucleus
nTPM: 583.1
2158 Male, age 61, both hemispheres 746.0
2367 Female, age 91, left hemisphere 536.2
2008 Male, age 80, left hemisphere 535.0
2324 Male, age 76, both hemispheres 515.2
Reticular pontine nucleus, caudal
nTPM: 534.3
2092 Male, age 76, both hemispheres 597.6
2559 Male, age 74, both hemispheres 551.4
2332 Male, age 80, right hemisphere 495.6
2457 Female, age 91, both hemispheres 492.6
Reticular pontine nucleus, oral
nTPM: 534.6
2361 Male, age 74, both hemispheres 595.5
2012 Female, age 85, both hemispheres 531.8
1939 Male, age 80, both hemispheres 520.1
2167 Male, age 76, both hemispheres 515.8
2366 Female, age 91, both hemispheres 509.9
Reticulotegmental nucleus
nTPM: 517.0
2452 Male, age 74, both hemispheres 533.5
2322 Female, age 91, both hemispheres 528.3
2333 Male, age 80, both hemispheres 509.1
2325 Male, age 76, both hemispheres 497.3
Spinal trigeminal nucleus, oral
nTPM: 522.3
2164 Male, age 80, both hemispheres 555.6
2737 Female, age 85, both hemispheres 517.1
1978 Male, age 76, both hemispheres 494.3
Subcoeruleus area
nTPM: 504.7
1958 Male, age 80, both hemispheres 550.8
2323 Female, age 91, left hemisphere 529.5
2369 Female, age 85, left hemisphere 497.2
2089 Male, age 76, left hemisphere 495.5
2451 Male, age 74, both hemispheres 450.3
Superior olive
nTPM: 571.1
2364 Male, age 74, right hemisphere 668.8
1875 Female, age 85, both hemispheres 598.1
2020 Male, age 76, both hemispheres 550.0
2561 Female, age 91, both hemispheres 528.2
2329 Male, age 80, right hemisphere 510.3
Ventral periolivary nuclei
nTPM: 538.0
2130 Female, age 85, both hemispheres 589.7
2165 Male, age 80, both hemispheres 574.9
2023 Male, age 76, both hemispheres 544.6
2794 Female, age 91, left hemisphere 442.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 538.1
2359 Male, age 61, both hemispheres 570.1
2449 Male, age 74, both hemispheres 554.3
2161 Male, age 80, both hemispheres 548.6
2840 Female, age 85, both hemispheres 545.6
1959 Male, age 76, both hemispheres 544.2
2456 Female, age 91, both hemispheres 465.7

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1156.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 719.7
FF:10165-103B3 76 years, female 800.6
FF:10182-103D2 60 years, female 638.7
Pons
Scaled Tags Per Million: 1156.2
FF:10033-101E6 18-54 years, mixed 1156.2

PONS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

471.0
Mouse sample Sample description nTPM
Pons
nTPM: 471.0
Samples: 4

Max nTPM: 486.0
Min nTPM: 462.1
Sample A 486.0
Sample B 466.7
Sample C 462.1
Sample D 469.2

PONS - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Rat sample Sample description nTPM
Pons
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.1

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