CFL1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • CFL1
EVOLUTIONARY URINARY BLADDER Show tissue menu
BRAIN28 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM10 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE12 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CORPUS CALLOSUM DORSAL ROOT GANGLION ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
MOTOR AND PREFRONTAL CORTEX OCCIPITAL CORTEX OLFACTORY BULB PONS RETROSPLENIAL AND CINGULATE CORTEX SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES PERICARDIUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Kidney & Urinary bladder
Evolutionary methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:637.4 nTPM
HPA:637.4 nTPM
GTEx:491.1 nTPM
FANTOM5:840.2 Scaled Tags Per Million
Mouse:658.1 nTPM
Rat:0.0 nTPM
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA053761Antibody CAB033687Antibody CAB037077
Urothelial cells Not detectedMediumMedium




URINARY BLADDER - PROTEINTALKS DB MS
Median intensity 440716
Sample Intensity
Urinary bladder_01
440716

URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

637.4
overview
Male, age 74
Urinary bladder sample 264
nTPM: 548.9
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 511.8
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 79
Urinary bladder sample 1597
nTPM: 885.1
N/A
Male, age 52
Urinary bladder sample 1598
nTPM: 603.9

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

491.1
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 491.1
Samples: 77

Max nTPM: 905.5
Min nTPM: 275.0
Std nTPM: 122.2
Median nTPM: 486.0
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 905.5
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 762.6
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 762.0
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 678.7
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 678.0
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 677.9
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 676.8
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 670.5
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 665.7
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 658.4
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 640.2
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 604.5
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 596.8
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 590.3
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 581.7
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 576.9
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 572.2
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 568.7
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 567.6
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 558.2
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 555.8
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 555.2
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 553.7
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 550.6
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 546.6
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 538.2
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 530.3
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 529.5
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 525.3
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 518.7
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 507.6
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 504.4
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 501.8
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 501.5
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 495.8
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 495.3
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 489.6
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 487.5
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 486.0
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 484.1
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 471.2
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 467.1
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 465.2
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 461.3
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 460.0
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 459.9
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 458.9
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 458.2
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 453.1
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 444.8
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 442.9
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 437.9
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 417.1
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 416.5
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 408.5
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 402.9
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 400.4
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 391.2
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 391.1
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 385.9
GTEX-Q734-1226-SM-GRR21 40-49 years, female 373.0
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 362.2
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 357.7
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 357.6
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 357.0
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 355.6
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 355.1
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 350.3
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 345.4
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 334.7
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 332.6
GTEX-R45C-2426-SM-HL11G 60-69 years, female 329.4
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 329.0
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 323.8
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 320.2
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 312.6
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 275.0
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

840.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 840.2
FF:10011-101C2 55,58,79 years, mixed 840.2

URINARY BLADDER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

658.1
Mouse sample Sample description nTPM
Urinary bladder
nTPM: 658.1
Samples: 4

Max nTPM: 721.3
Min nTPM: 551.5
Sample D 721.3
Sample A 551.5
Sample B 715.8
Sample C 643.7

URINARY BLADDER - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Rat sample Sample description nTPM
Urinary bladder
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.