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  • RPL38
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1836.4 nTPM
HPA Brain:544.0 nTPM
GTEx:1836.4 nTPM
FANTOM5:958.1 Scaled Tags Per Million
Pig:220.7 nTPM
Mouse:1147.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

544.0
Sample id Sample description nTPM
Amygdala
nTPM: 544.0
2695 Female, age 67, right hemisphere 811.6
2814 Male, age 76, right hemisphere 574.0
2517 Female, age 94, left hemisphere 473.8
2514 Male, age 75, right hemisphere 457.9
1987 Female, age 91, left hemisphere 402.9
Basal amygdala
nTPM: 451.2
2827 Female, age 67, right hemisphere 610.1
2609 Male, age 75, right hemisphere 463.5
2685 Female, age 94, left hemisphere 423.1
1955 Male, age 76, both hemispheres 421.8
2243 Female, age 91, right hemisphere 395.7
2110 Male, age 80, left hemisphere 392.9
Central amygdala
nTPM: 495.5
2826 Female, age 94, left hemisphere 778.8
1905 Male, age 76, both hemispheres 472.1
2239 Male, age 80, left hemisphere 438.7
2515 Male, age 75, right hemisphere 423.9
2701 Female, age 91, right hemisphere 364.1
Corticomedial amygdala
nTPM: 424.2
2535 Female, age 67, right hemisphere 480.7
2429 Female, age 94, left hemisphere 445.3
2240 Male, age 76, both hemispheres 440.1
2829 Male, age 80, left hemisphere 421.6
2428 Male, age 75, right hemisphere 387.2
2242 Female, age 91, right hemisphere 370.5
Lateral amygdala
nTPM: 481.2
2830 Female, age 67, right hemisphere 744.8
2534 Female, age 94, left hemisphere 579.8
2516 Male, age 75, right hemisphere 543.5
1883 Male, age 76, both hemispheres 362.3
2256 Male, age 80, left hemisphere 357.3
2255 Female, age 91, right hemisphere 299.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1836.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1836.4
Samples: 181

Max nTPM: 5690.2
Min nTPM: 854.2
Std nTPM: 726.7
Median nTPM: 1742.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5690.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5625.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4715.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4255.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3728.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3691.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 3400.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3275.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3202.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3169.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3108.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3042.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2849.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2748.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2637.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 2617.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2617.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2594.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2519.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2479.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2456.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2454.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2443.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2385.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2375.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 2365.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2361.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 2342.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2329.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2328.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2297.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2294.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2256.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2166.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2153.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 2141.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2127.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 2086.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2078.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 2078.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2074.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2067.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2041.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2040.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2039.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 2034.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2034.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2031.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2030.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2025.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2014.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2002.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1998.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1976.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1971.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1960.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1958.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1955.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1942.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1937.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1927.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1921.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1912.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1892.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1886.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1871.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1856.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1852.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1851.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1850.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1849.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1847.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1836.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1828.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1813.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1812.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1810.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1809.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1803.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1797.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1790.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1786.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1774.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1770.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1760.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1759.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1753.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1752.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1744.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1743.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1742.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1737.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1735.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1724.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1681.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1668.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1656.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1653.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1634.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1595.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1591.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1587.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1585.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1570.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1564.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1561.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1541.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1537.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1524.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1519.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1513.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1511.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1504.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1496.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1487.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1487.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1486.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1480.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1479.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1472.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1470.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1457.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1453.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1447.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1442.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1438.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1430.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1427.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1421.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1419.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1418.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1410.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1408.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1403.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1395.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1392.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1390.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1373.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1365.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1356.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1354.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1351.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1346.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1341.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1330.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1318.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1311.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1311.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1298.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1282.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1271.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1265.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1264.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1257.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1218.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1216.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1214.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1211.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1201.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1199.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1178.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1168.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1167.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1147.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1146.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1144.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1136.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1136.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1129.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1123.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1114.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1110.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1104.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1102.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1096.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1031.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1028.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1020.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 980.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 944.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 854.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

958.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 958.1
FF:10151-102I7 76 years, female 958.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.7
Pig sample Sample description nTPM
Amygdala
nTPM: 220.7
Samples: 4

Max nTPM: 277.9
Min nTPM: 106.6
Sample A Female 273.5
Sample B Female 277.9
Sample C Male 224.6
Sample D Male 106.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1147.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1147.1
Samples: 4

Max nTPM: 1239.4
Min nTPM: 1057.9
Sample A Male 1057.9
Sample B Male 1150.6
Sample C Female 1239.4
Sample D Female 1140.6

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