On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1906.5
nTPM
HPA Brain:
645.9
nTPM
GTEx:
1906.5
nTPM
FANTOM5:
1442.6
Scaled Tags Per Million
Macaque:
687.1
nTPM
Mouse:
889.7
nTPM
Pig:
423.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
9140
Sample
Intensity
Spinal cord_01
16048
Spinal cord_02
10534
Spinal cord_03
5495
Spinal cord_04
12664
Spinal cord_05
3905
Spinal cord_06
15409
Spinal cord_07
7746
Spinal cord_08
3196
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
645.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 607.6
2193
Male, age 75, both hemispheres
712.6
2819
Male, age 47, both hemispheres
645.8
2734
Male, age 80, both hemispheres
562.0
2818
Female, age 79, both hemispheres
510.0
Cervical spinal cord, central gray nTPM: 513.8
2565
Male, age 75, midline
664.5
1981
Female, age 72, midline
564.8
2048
Male, age 55, midline
477.6
2816
Male, age 47, midline
439.6
2194
Female, age 79, both hemispheres
422.4
Cervical spinal cord, dorsal horn nTPM: 514.0
2173
Female, age 72, unknown
676.4
2296
Male, age 66, both hemispheres
658.9
2069
Male, age 47, both hemispheres
566.2
1877
Male, age 55, unknown
477.5
2721
Male, age 90, both hemispheres
354.6
2297
Male, age 75, both hemispheres
350.6
Cervical spinal cord, ventral horn nTPM: 637.0
2480
Male, age 75, both hemispheres
957.2
2809
Male, age 90, both hemispheres
823.4
2098
Female, age 72, unknown
623.1
2068
Male, age 55, unknown
564.8
2295
Male, age 66, both hemispheres
440.3
2820
Female, age 79, both hemispheres
413.4
Dorsal funiculus (white matter) nTPM: 611.4
2812
Male, age 66, both hemispheres
683.8
2128
Male, age 75, both hemispheres
667.1
2810
Male, age 90, both hemispheres
666.5
2817
Male, age 47, both hemispheres
570.7
2064
Female, age 79, both hemispheres
469.0
Lateral funiculus (white matter) nTPM: 645.9
2192
Male, age 75, both hemispheres
774.0
2094
Female, age 79, both hemispheres
615.4
2099
Male, age 90, both hemispheres
602.8
2294
Male, age 66, both hemispheres
591.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1906.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 1906.5
Samples: 204
Max nTPM: 4414.8
Min nTPM: 734.7
Std nTPM: 648.6
Median nTPM: 1784.1
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
4414.8
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
3759.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
3500.8
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
3486.3
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
3430.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
3415.2
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
3350.4
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
3278.8
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
3272.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
3168.8
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
3148.0
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
3111.1
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
3093.3
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
3020.4
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
2971.1
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
2959.8
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
2926.5
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
2910.5
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
2889.4
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
2886.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
2881.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
2852.4
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
2806.6
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
2792.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
2770.1
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
2769.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
2704.4
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
2679.8
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
2661.0
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
2632.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
2613.9
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
2599.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
2599.5
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
2592.0
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
2549.2
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
2549.1
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
2542.0
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
2526.4
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
2493.4
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
2489.0
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
2447.7
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
2425.7
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
2423.8
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
2407.9
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
2402.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
2354.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
2321.9
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
2315.8
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
2281.7
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
2243.0
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
2239.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
2238.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
2225.8
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
2223.4
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
2183.3
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
2177.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
2156.3
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
2139.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
2134.4
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
2131.9
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
2122.9
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
2120.9
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
2113.2
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
2106.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
2103.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
2091.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
2086.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
2084.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
2069.2
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
2058.9
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
2035.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
2031.7
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
2019.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
1997.8
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1986.2
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1984.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1979.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1974.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1964.1
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
1962.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1961.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1957.5
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1947.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
1925.1
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
1924.6
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1920.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
1911.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1910.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1881.8
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1880.2
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1869.8
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1853.9
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
1845.3
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1844.7
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
1817.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1812.8
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1805.1
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1802.5
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1798.6
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
1795.5
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1791.3
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1785.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1782.9
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1776.5
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1769.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
1764.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1749.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1741.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1741.2
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1740.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
1728.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
1727.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
1725.4
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
1713.7
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1710.2
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1708.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1706.7
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
1692.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1680.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1679.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1674.9
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1673.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
1672.8
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1666.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1665.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
1659.9
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1658.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
1657.6
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1639.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1638.3
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
1609.3
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1604.6
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
1602.0
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1596.2
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1595.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
1589.9
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
1570.0
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
1557.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
1553.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
1537.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
1531.4
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
1520.6
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
1484.6
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1475.0
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
1471.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
1468.1
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
1460.8
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1454.9
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1449.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
1449.7
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
1448.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1437.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
1436.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1429.6
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1425.9
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
1425.4
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
1417.5
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
1387.4
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
1382.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
1373.9
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
1364.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
1351.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
1351.8
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
1346.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
1343.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1317.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
1297.6
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
1285.2
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
1272.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
1261.9
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
1254.4
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1251.4
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
1250.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
1242.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
1242.0
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
1241.6
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
1234.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
1226.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1224.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
1220.6
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
1212.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
1208.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
1201.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
1199.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1185.6
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
1173.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
1166.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
1154.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
1140.6
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
1128.0
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
1125.2
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
1109.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
1076.6
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
1072.7
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
1035.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
1014.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
1013.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
973.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
964.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
893.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
876.2
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
872.4
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
808.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
734.7
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
687.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 486.3
Samples: 2
Max nTPM: 566.0
Min nTPM: 406.5
Sample A
406.5
Sample B
566.0
Ventral spinal cord nTPM: 687.1
Samples: 1
Max nTPM: 687.1
Min nTPM: 687.1
Sample A
687.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
423.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 423.7
Samples: 4
Max nTPM: 598.8
Min nTPM: 271.6
Sample A
Female
359.9
Sample B
Female
464.4
Sample C
Male
598.8
Sample D
Male
271.6
Ventral spinal cord nTPM: 390.3
Samples: 4
Max nTPM: 441.6
Min nTPM: 335.6
Sample A
Female
378.9
Sample B
Female
405.0
Sample C
Male
441.6
Sample D
Male
335.6
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
889.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 889.7
Samples: 4
Max nTPM: 990.6
Min nTPM: 794.4
Sample A
857.2
Sample B
990.6
Sample C
916.5
Sample D
794.4
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The Human Protein Atlas project is funded
