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RPL38
HPA
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  • TISSUE

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  • RPL38
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1906.5 nTPM
HPA Brain:635.6 nTPM
GTEx:1906.5 nTPM
FANTOM5:1442.6 Scaled Tags Per Million
Pig:421.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

635.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 512.6
2565 Male, age 75, midline 664.2
1981 Female, age 72, midline 562.8
2048 Male, age 55, midline 476.2
2816 Male, age 47, midline 438.7
2194 Female, age 79, both hemispheres 421.4
Cervical spinal cord, dorsal horn
nTPM: 512.9
2173 Female, age 72, unknown 674.1
2296 Male, age 66, both hemispheres 658.0
2069 Male, age 47, both hemispheres 564.9
1877 Male, age 55, unknown 476.2
2721 Male, age 90, both hemispheres 353.9
2297 Male, age 75, both hemispheres 350.4
Cervical spinal cord, ventral horn
nTPM: 635.6
2480 Male, age 75, both hemispheres 956.2
2809 Male, age 90, both hemispheres 821.4
2098 Female, age 72, unknown 620.7
2068 Male, age 55, unknown 563.3
2295 Male, age 66, both hemispheres 439.5
2820 Female, age 79, both hemispheres 412.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1906.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1906.5
Samples: 204

Max nTPM: 4414.8
Min nTPM: 734.7
Std nTPM: 648.6
Median nTPM: 1784.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 4414.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 3759.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 3500.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 3486.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3430.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3415.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3350.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 3278.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 3272.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 3168.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3148.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 3111.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 3093.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 3020.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2971.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2959.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2926.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2910.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2889.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 2886.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2881.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2852.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2806.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2792.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2770.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2769.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2704.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2679.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2661.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 2632.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2613.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2599.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2599.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2592.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 2549.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 2549.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 2542.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2526.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 2493.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2489.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2447.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2425.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2423.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2407.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 2402.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2354.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2321.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 2315.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2281.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2243.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2239.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2238.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 2225.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2223.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2183.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 2177.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2156.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2139.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2134.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2131.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 2122.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 2120.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2113.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2106.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2103.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2091.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2086.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2084.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2069.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 2058.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2035.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2031.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 2019.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1997.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1986.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1984.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1979.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1974.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1964.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1962.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1961.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1957.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1947.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1925.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1924.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1920.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1911.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1910.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1881.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1880.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1869.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1853.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1845.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1844.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1817.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1812.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1805.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1802.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1798.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1795.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1791.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1785.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1782.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1776.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1769.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1764.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1749.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1741.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1741.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1740.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1728.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1727.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1725.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1713.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1710.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1708.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1706.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1692.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1680.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1679.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1674.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1673.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1672.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1666.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1665.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1659.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1658.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1657.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1639.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1638.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1609.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1604.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1602.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1596.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1595.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1589.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1570.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1557.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1553.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1537.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1531.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1520.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1484.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1475.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1471.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1468.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1460.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1454.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1449.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1449.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1448.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1437.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1436.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1429.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1425.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1425.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1417.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1387.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1382.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1373.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1364.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1351.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1351.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1346.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1343.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1317.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1297.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1285.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1272.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1261.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1254.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1251.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1250.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1242.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1242.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1241.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1234.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1226.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1224.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1220.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1212.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1208.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1201.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1199.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1185.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 1173.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1166.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1154.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1140.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1128.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1125.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1109.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1076.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1072.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1035.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1014.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1013.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 973.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 964.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 893.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 876.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 872.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 808.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 734.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1442.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1442.6
FF:10181-103D1 60 years, female 2204.8
FF:10159-103A6 76 years, female 680.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

421.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 421.9
Samples: 4

Max nTPM: 596.2
Min nTPM: 270.5
Sample A Female 358.7
Sample B Female 462.0
Sample C Male 596.2
Sample D Male 270.5
Ventral spinal cord
nTPM: 388.6
Samples: 4

Max nTPM: 439.9
Min nTPM: 334.2
Sample A Female 377.4
Sample B Female 402.8
Sample C Male 439.9
Sample D Male 334.2

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