A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2919.1
nTPM
Monaco:
288.7
nTPM
Schmiedel:
350.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2919.1
HPA sample
nTPM
Memory B-cell nTPM: 2919.0
Samples: 6
Max nTPM: 3693.9
Min nTPM: 2047.0
P10809_1017
2638.9
P10809_1025
3163.7
P10809_1044
2047.0
P10809_1063
3184.4
P10809_1092
2786.4
P10809_1105
3693.9
Naive B-cell nTPM: 2787.3
Samples: 6
Max nTPM: 3366.3
Min nTPM: 1793.9
P10809_1011
2714.6
P10809_1029
2926.1
P10809_1048
1793.9
P10809_1067
3309.8
P10809_1091
2612.8
P10809_1104
3366.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
288.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 288.7
Samples: 4
Max nTPM: 481.7
Min nTPM: 104.6
RHH5310_R3677
220.6
RHH5218_R3590
104.6
RHH5247_R3619
348.0
RHH5276_R3648
481.7
Naive B-cell nTPM: 281.4
Samples: 4
Max nTPM: 584.3
Min nTPM: 96.5
RHH5308_R3675
252.9
RHH5216_R3588
96.5
RHH5245_R3617
584.3
RHH5274_R3646
192.0
Non-switched memory B-cell nTPM: 213.0
Samples: 4
Max nTPM: 434.6
Min nTPM: 78.3
RHH5309_R3676
225.0
RHH5217_R3589
114.1
RHH5246_R3618
78.3
RHH5275_R3647
434.6
Plasmablast nTPM: 215.3
Samples: 4
Max nTPM: 301.8
Min nTPM: 96.2
RHH5312_R3679
252.8
RHH5220_R3592
96.2
RHH5249_R3621
210.2
RHH5278_R3650
301.8
Switched memory B-cell nTPM: 186.8
Samples: 4
Max nTPM: 329.0
Min nTPM: 129.4
RHH5311_R3678
158.9
RHH5219_R3591
129.4
RHH5248_R3620
129.8
RHH5277_R3649
329.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
350.0
Schmiedel sample id
TPM
Naive B-cell TPM: 350.0
Samples: 91
Max TPM: 500.4
Min TPM: 253.4
B_CELL_NAIVE_1
500.4
B_CELL_NAIVE_2
487.2
B_CELL_NAIVE_3
461.1
B_CELL_NAIVE_4
457.0
B_CELL_NAIVE_5
450.7
B_CELL_NAIVE_6
435.3
B_CELL_NAIVE_7
430.3
B_CELL_NAIVE_8
428.2
B_CELL_NAIVE_9
415.9
B_CELL_NAIVE_10
411.7
B_CELL_NAIVE_11
411.3
B_CELL_NAIVE_12
408.6
B_CELL_NAIVE_13
408.4
B_CELL_NAIVE_14
405.9
B_CELL_NAIVE_15
405.1
B_CELL_NAIVE_16
404.1
B_CELL_NAIVE_17
401.7
B_CELL_NAIVE_18
401.3
B_CELL_NAIVE_19
396.6
B_CELL_NAIVE_20
396.2
B_CELL_NAIVE_21
392.1
B_CELL_NAIVE_22
391.1
B_CELL_NAIVE_23
390.5
B_CELL_NAIVE_24
389.5
B_CELL_NAIVE_25
388.9
B_CELL_NAIVE_26
387.0
B_CELL_NAIVE_27
374.8
B_CELL_NAIVE_28
374.7
B_CELL_NAIVE_29
372.5
B_CELL_NAIVE_30
372.0
B_CELL_NAIVE_31
371.6
B_CELL_NAIVE_32
371.0
B_CELL_NAIVE_33
370.6
B_CELL_NAIVE_34
370.1
B_CELL_NAIVE_35
368.9
B_CELL_NAIVE_36
367.8
B_CELL_NAIVE_37
366.1
B_CELL_NAIVE_38
364.7
B_CELL_NAIVE_39
362.7
B_CELL_NAIVE_40
361.2
B_CELL_NAIVE_41
358.6
B_CELL_NAIVE_42
354.1
B_CELL_NAIVE_43
353.2
B_CELL_NAIVE_44
347.6
B_CELL_NAIVE_45
344.7
B_CELL_NAIVE_46
343.2
B_CELL_NAIVE_47
341.3
B_CELL_NAIVE_48
340.7
B_CELL_NAIVE_49
339.8
B_CELL_NAIVE_50
339.6
B_CELL_NAIVE_51
338.5
B_CELL_NAIVE_52
337.1
B_CELL_NAIVE_53
336.4
B_CELL_NAIVE_54
335.7
B_CELL_NAIVE_55
332.7
B_CELL_NAIVE_56
329.4
B_CELL_NAIVE_57
325.9
B_CELL_NAIVE_58
325.8
B_CELL_NAIVE_59
322.7
B_CELL_NAIVE_60
322.3
B_CELL_NAIVE_61
319.9
B_CELL_NAIVE_62
319.1
B_CELL_NAIVE_63
318.7
B_CELL_NAIVE_64
317.8
B_CELL_NAIVE_65
317.2
B_CELL_NAIVE_66
316.5
B_CELL_NAIVE_67
313.0
B_CELL_NAIVE_68
309.6
B_CELL_NAIVE_69
305.9
B_CELL_NAIVE_70
303.8
B_CELL_NAIVE_71
303.2
B_CELL_NAIVE_72
302.9
B_CELL_NAIVE_73
299.3
B_CELL_NAIVE_74
295.9
B_CELL_NAIVE_75
294.9
B_CELL_NAIVE_76
292.8
B_CELL_NAIVE_77
290.9
B_CELL_NAIVE_78
289.3
B_CELL_NAIVE_79
288.4
B_CELL_NAIVE_80
288.3
B_CELL_NAIVE_81
286.4
B_CELL_NAIVE_82
280.1
B_CELL_NAIVE_83
278.8
B_CELL_NAIVE_84
276.6
B_CELL_NAIVE_85
272.1
B_CELL_NAIVE_86
269.6
B_CELL_NAIVE_87
269.4
B_CELL_NAIVE_88
261.8
B_CELL_NAIVE_89
259.5
B_CELL_NAIVE_90
258.6
B_CELL_NAIVE_91
253.4
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