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BETA
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  • RPL38
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:2919.1 nTPM
Monaco:288.7 nTPM
Schmiedel:350.0 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2919.1
HPA sample nTPM
Memory B-cell
nTPM: 2919.0
Samples: 6

Max nTPM: 3693.9
Min nTPM: 2047.0
P10809_1017 2638.9
P10809_1025 3163.7
P10809_1044 2047.0
P10809_1063 3184.4
P10809_1092 2786.4
P10809_1105 3693.9
Naive B-cell
nTPM: 2787.3
Samples: 6

Max nTPM: 3366.3
Min nTPM: 1793.9
P10809_1011 2714.6
P10809_1029 2926.1
P10809_1048 1793.9
P10809_1067 3309.8
P10809_1091 2612.8
P10809_1104 3366.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

288.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 288.7
Samples: 4

Max nTPM: 481.7
Min nTPM: 104.6
RHH5310_R3677 220.6
RHH5218_R3590 104.6
RHH5247_R3619 348.0
RHH5276_R3648 481.7
Naive B-cell
nTPM: 281.4
Samples: 4

Max nTPM: 584.3
Min nTPM: 96.5
RHH5308_R3675 252.9
RHH5216_R3588 96.5
RHH5245_R3617 584.3
RHH5274_R3646 192.0
Non-switched memory B-cell
nTPM: 213.0
Samples: 4

Max nTPM: 434.6
Min nTPM: 78.3
RHH5309_R3676 225.0
RHH5217_R3589 114.1
RHH5246_R3618 78.3
RHH5275_R3647 434.6
Plasmablast
nTPM: 215.3
Samples: 4

Max nTPM: 301.8
Min nTPM: 96.2
RHH5312_R3679 252.8
RHH5220_R3592 96.2
RHH5249_R3621 210.2
RHH5278_R3650 301.8
Switched memory B-cell
nTPM: 186.8
Samples: 4

Max nTPM: 329.0
Min nTPM: 129.4
RHH5311_R3678 158.9
RHH5219_R3591 129.4
RHH5248_R3620 129.8
RHH5277_R3649 329.0

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

350.0
Schmiedel sample id TPM
Naive B-cell
TPM: 350.0
Samples: 91

Max TPM: 500.4
Min TPM: 253.4
B_CELL_NAIVE_1 500.4
B_CELL_NAIVE_2 487.2
B_CELL_NAIVE_3 461.1
B_CELL_NAIVE_4 457.0
B_CELL_NAIVE_5 450.7
B_CELL_NAIVE_6 435.3
B_CELL_NAIVE_7 430.3
B_CELL_NAIVE_8 428.2
B_CELL_NAIVE_9 415.9
B_CELL_NAIVE_10 411.7
B_CELL_NAIVE_11 411.3
B_CELL_NAIVE_12 408.6
B_CELL_NAIVE_13 408.4
B_CELL_NAIVE_14 405.9
B_CELL_NAIVE_15 405.1
B_CELL_NAIVE_16 404.1
B_CELL_NAIVE_17 401.7
B_CELL_NAIVE_18 401.3
B_CELL_NAIVE_19 396.6
B_CELL_NAIVE_20 396.2
B_CELL_NAIVE_21 392.1
B_CELL_NAIVE_22 391.1
B_CELL_NAIVE_23 390.5
B_CELL_NAIVE_24 389.5
B_CELL_NAIVE_25 388.9
B_CELL_NAIVE_26 387.0
B_CELL_NAIVE_27 374.8
B_CELL_NAIVE_28 374.7
B_CELL_NAIVE_29 372.5
B_CELL_NAIVE_30 372.0
B_CELL_NAIVE_31 371.6
B_CELL_NAIVE_32 371.0
B_CELL_NAIVE_33 370.6
B_CELL_NAIVE_34 370.1
B_CELL_NAIVE_35 368.9
B_CELL_NAIVE_36 367.8
B_CELL_NAIVE_37 366.1
B_CELL_NAIVE_38 364.7
B_CELL_NAIVE_39 362.7
B_CELL_NAIVE_40 361.2
B_CELL_NAIVE_41 358.6
B_CELL_NAIVE_42 354.1
B_CELL_NAIVE_43 353.2
B_CELL_NAIVE_44 347.6
B_CELL_NAIVE_45 344.7
B_CELL_NAIVE_46 343.2
B_CELL_NAIVE_47 341.3
B_CELL_NAIVE_48 340.7
B_CELL_NAIVE_49 339.8
B_CELL_NAIVE_50 339.6
B_CELL_NAIVE_51 338.5
B_CELL_NAIVE_52 337.1
B_CELL_NAIVE_53 336.4
B_CELL_NAIVE_54 335.7
B_CELL_NAIVE_55 332.7
B_CELL_NAIVE_56 329.4
B_CELL_NAIVE_57 325.9
B_CELL_NAIVE_58 325.8
B_CELL_NAIVE_59 322.7
B_CELL_NAIVE_60 322.3
B_CELL_NAIVE_61 319.9
B_CELL_NAIVE_62 319.1
B_CELL_NAIVE_63 318.7
B_CELL_NAIVE_64 317.8
B_CELL_NAIVE_65 317.2
B_CELL_NAIVE_66 316.5
B_CELL_NAIVE_67 313.0
B_CELL_NAIVE_68 309.6
B_CELL_NAIVE_69 305.9
B_CELL_NAIVE_70 303.8
B_CELL_NAIVE_71 303.2
B_CELL_NAIVE_72 302.9
B_CELL_NAIVE_73 299.3
B_CELL_NAIVE_74 295.9
B_CELL_NAIVE_75 294.9
B_CELL_NAIVE_76 292.8
B_CELL_NAIVE_77 290.9
B_CELL_NAIVE_78 289.3
B_CELL_NAIVE_79 288.4
B_CELL_NAIVE_80 288.3
B_CELL_NAIVE_81 286.4
B_CELL_NAIVE_82 280.1
B_CELL_NAIVE_83 278.8
B_CELL_NAIVE_84 276.6
B_CELL_NAIVE_85 272.1
B_CELL_NAIVE_86 269.6
B_CELL_NAIVE_87 269.4
B_CELL_NAIVE_88 261.8
B_CELL_NAIVE_89 259.5
B_CELL_NAIVE_90 258.6
B_CELL_NAIVE_91 253.4
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