A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1857.4
nTPM
Monaco:
224.3
nTPM
Schmiedel:
247.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1857.4
HPA sample
nTPM
Classical monocyte nTPM: 1857.4
Samples: 6
Max nTPM: 2320.0
Min nTPM: 1440.9
P10809_1003
2263.3
P10809_1020
1491.3
P10809_1039
1440.9
P10809_1058
2096.8
P10809_1080
1532.0
P10809_1107
2320.0
Intermediate monocyte nTPM: 1535.0
Samples: 6
Max nTPM: 2514.0
Min nTPM: 840.5
P10809_1004
1030.1
P10809_1023
1574.2
P10809_1042
1529.1
P10809_1061
840.5
P10809_1081
1722.2
P10809_1108
2514.0
Non-classical monocyte nTPM: 1394.9
Samples: 5
Max nTPM: 1999.2
Min nTPM: 952.6
P10809_1005
1242.3
P10809_1053
1312.3
P10809_1072
952.6
P10809_1082
1468.1
P10809_1109
1999.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
224.3
Monaco sample
nTPM
Classical monocyte nTPM: 134.4
Samples: 4
Max nTPM: 196.2
Min nTPM: 75.6
RHH5313_R3680
196.2
RHH5221_R3593
154.3
RHH5250_R3622
75.6
RHH5279_R3651
111.6
Intermediate monocyte nTPM: 224.3
Samples: 4
Max nTPM: 305.1
Min nTPM: 128.0
RHH5314_R3681
162.5
RHH5222_R3594
301.5
RHH5251_R3623
305.1
RHH5280_R3652
128.0
Non-classical monocyte nTPM: 138.3
Samples: 4
Max nTPM: 196.5
Min nTPM: 71.1
RHH5315_R3682
196.5
RHH5223_R3595
123.7
RHH5252_R3624
161.9
RHH5281_R3653
71.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
247.8
Schmiedel sample id
TPM
Classical monocyte TPM: 247.8
Samples: 91
Max TPM: 334.9
Min TPM: 161.0
MONOCYTES_1
334.9
MONOCYTES_2
331.3
MONOCYTES_3
306.1
MONOCYTES_4
306.0
MONOCYTES_5
300.5
MONOCYTES_6
293.9
MONOCYTES_7
290.9
MONOCYTES_8
290.7
MONOCYTES_9
285.8
MONOCYTES_10
285.7
MONOCYTES_11
283.0
MONOCYTES_12
282.6
MONOCYTES_13
280.7
MONOCYTES_14
278.4
MONOCYTES_15
278.2
MONOCYTES_16
275.9
MONOCYTES_17
275.0
MONOCYTES_18
275.0
MONOCYTES_19
272.4
MONOCYTES_20
271.7
MONOCYTES_21
271.0
MONOCYTES_22
270.2
MONOCYTES_23
270.0
MONOCYTES_24
269.5
MONOCYTES_25
268.0
MONOCYTES_26
267.1
MONOCYTES_27
264.8
MONOCYTES_28
263.9
MONOCYTES_29
263.4
MONOCYTES_30
262.6
MONOCYTES_31
262.5
MONOCYTES_32
260.7
MONOCYTES_33
258.1
MONOCYTES_34
258.0
MONOCYTES_35
255.5
MONOCYTES_36
255.0
MONOCYTES_37
254.8
MONOCYTES_38
254.7
MONOCYTES_39
253.6
MONOCYTES_40
253.4
MONOCYTES_41
253.2
MONOCYTES_42
252.6
MONOCYTES_43
251.5
MONOCYTES_44
249.5
MONOCYTES_45
248.9
MONOCYTES_46
248.5
MONOCYTES_47
247.9
MONOCYTES_48
246.9
MONOCYTES_49
246.8
MONOCYTES_50
245.7
MONOCYTES_51
242.3
MONOCYTES_52
241.2
MONOCYTES_53
241.0
MONOCYTES_54
240.7
MONOCYTES_55
238.2
MONOCYTES_56
235.4
MONOCYTES_57
234.6
MONOCYTES_58
233.1
MONOCYTES_59
231.8
MONOCYTES_60
230.6
MONOCYTES_61
230.4
MONOCYTES_62
229.7
MONOCYTES_63
228.8
MONOCYTES_64
227.7
MONOCYTES_65
227.3
MONOCYTES_66
226.7
MONOCYTES_67
225.2
MONOCYTES_68
225.1
MONOCYTES_69
225.1
MONOCYTES_70
224.9
MONOCYTES_71
224.8
MONOCYTES_72
224.4
MONOCYTES_73
222.7
MONOCYTES_74
222.3
MONOCYTES_75
220.4
MONOCYTES_76
218.8
MONOCYTES_77
218.1
MONOCYTES_78
218.1
MONOCYTES_79
217.1
MONOCYTES_80
215.9
MONOCYTES_81
214.1
MONOCYTES_82
213.7
MONOCYTES_83
213.2
MONOCYTES_84
206.4
MONOCYTES_85
205.8
MONOCYTES_86
205.7
MONOCYTES_87
203.9
MONOCYTES_88
194.3
MONOCYTES_89
184.6
MONOCYTES_90
180.4
MONOCYTES_91
161.0
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Non-classical monocyte TPM: 201.2
Samples: 90
Max TPM: 299.5
Min TPM: 118.1
M2_1
299.5
M2_2
260.2
M2_3
255.3
M2_4
253.4
M2_5
244.2
M2_6
243.7
M2_7
238.3
M2_8
237.5
M2_9
234.4
M2_10
233.6
M2_11
233.3
M2_12
230.4
M2_13
230.1
M2_14
229.9
M2_15
225.2
M2_16
224.7
M2_17
222.6
M2_18
222.2
M2_19
219.3
M2_20
218.9
M2_21
218.8
M2_22
218.8
M2_23
218.3
M2_24
218.1
M2_25
217.2
M2_26
217.1
M2_27
215.7
M2_28
214.5
M2_29
213.7
M2_30
213.4
M2_31
213.3
M2_32
212.6
M2_33
212.3
M2_34
211.5
M2_35
211.4
M2_36
211.4
M2_37
209.9
M2_38
209.7
M2_39
208.3
M2_40
208.2
M2_41
206.2
M2_42
204.9
M2_43
204.7
M2_44
204.6
M2_45
204.1
M2_46
203.5
M2_47
203.4
M2_48
200.6
M2_49
200.1
M2_50
199.2
M2_51
198.1
M2_52
197.8
M2_53
197.4
M2_54
196.6
M2_55
196.2
M2_56
194.6
M2_57
194.1
M2_58
194.1
M2_59
194.0
M2_60
193.0
M2_61
191.5
M2_62
190.8
M2_63
188.9
M2_64
187.3
M2_65
187.0
M2_66
186.8
M2_67
186.7
M2_68
186.4
M2_69
185.7
M2_70
183.3
M2_71
181.7
M2_72
179.9
M2_73
179.8
M2_74
179.2
M2_75
176.1
M2_76
176.0
M2_77
173.1
M2_78
172.6
M2_79
172.0
M2_80
171.5
M2_81
170.4
M2_82
167.2
M2_83
165.4
M2_84
155.2
M2_85
148.8
M2_86
145.4
M2_87
141.3
M2_88
123.0
M2_89
119.5
M2_90
118.1
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