A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1496.2
nTPM
Monaco:
113.8
nTPM
Schmiedel:
213.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1496.2
HPA sample
nTPM
NK-cell nTPM: 1496.1
Samples: 6
Max nTPM: 1785.2
Min nTPM: 783.3
P10809_1013
1458.3
P10809_1033
1669.6
P10809_1052
1627.4
P10809_1071
1785.2
P10809_1093
783.3
P10809_1103
1653.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.8
Monaco sample
nTPM
NK-cell nTPM: 113.8
Samples: 4
Max nTPM: 127.1
Min nTPM: 99.6
RHH5316_R3683
127.1
RHH5224_R3596
112.9
RHH5253_R3625
115.5
RHH5282_R3654
99.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
213.9
Schmiedel sample id
TPM
NK-cell TPM: 213.9
Samples: 90
Max TPM: 305.1
Min TPM: 137.2
NK_1
305.1
NK_2
300.2
NK_3
289.5
NK_4
289.3
NK_5
287.8
NK_6
281.6
NK_7
268.1
NK_8
267.8
NK_9
267.7
NK_10
267.1
NK_11
263.8
NK_12
258.0
NK_13
256.0
NK_14
256.0
NK_15
252.3
NK_16
251.5
NK_17
246.8
NK_18
246.8
NK_19
246.7
NK_20
245.6
NK_21
244.4
NK_22
241.3
NK_23
240.2
NK_24
238.2
NK_25
237.3
NK_26
231.2
NK_27
230.2
NK_28
227.2
NK_29
225.6
NK_30
225.3
NK_31
225.1
NK_32
224.5
NK_33
224.3
NK_34
224.2
NK_35
222.4
NK_36
220.2
NK_37
220.1
NK_38
219.4
NK_39
219.3
NK_40
218.4
NK_41
217.3
NK_42
217.2
NK_43
215.1
NK_44
214.0
NK_45
212.8
NK_46
212.5
NK_47
212.3
NK_48
210.6
NK_49
210.2
NK_50
210.1
NK_51
209.5
NK_52
209.3
NK_53
209.2
NK_54
208.4
NK_55
207.0
NK_56
205.3
NK_57
203.7
NK_58
200.8
NK_59
200.6
NK_60
200.2
NK_61
198.0
NK_62
197.5
NK_63
194.4
NK_64
190.4
NK_65
189.6
NK_66
188.6
NK_67
188.5
NK_68
188.0
NK_69
186.1
NK_70
184.5
NK_71
183.6
NK_72
181.5
NK_73
177.5
NK_74
175.7
NK_75
174.0
NK_76
173.5
NK_77
173.3
NK_78
167.1
NK_79
166.7
NK_80
166.6
NK_81
166.1
NK_82
164.5
NK_83
161.9
NK_84
159.1
NK_85
153.7
NK_86
147.8
NK_87
147.5
NK_88
141.5
NK_89
138.1
NK_90
137.2
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