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BETA
  • SUMMARY

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  • BRAIN

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  • CNP
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:535.8 nTPM
HPA Brain:1291.5 nTPM
GTEx:535.8 nTPM
FANTOM5:1488.1 Scaled Tags Per Million
Macaque:533.2 nTPM
Mouse:362.9 nTPM
Rat:658.4 nTPM
Pig:636.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1291.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1001.0
2411 Female, age 72, unknown 1390.8
1830 Male, age 51, unknown 1226.7
1870 Female, age 42, unknown 1200.8
1833 Male, age 53, unknown 1171.0
2019 Male, age 18, unknown 1154.0
2828 Female, age 72, unknown 994.2
2586 Male, age 75, left hemisphere 747.6
2666 Male, age 74, left hemisphere 736.5
1827 Male, age 72, unknown 727.9
2219 Male, age 76, both hemispheres 660.5
Dorsal raphe nucleus
nTPM: 721.0
2750 Male, age 76, both hemispheres 1305.9
2016 Female, age 72, unknown 798.6
1828 Male, age 53, unknown 651.9
2298 Female, age 72, unknown 461.3
2047 Male, age 72, unknown 387.5
Inferior colliculus
nTPM: 623.7
1890 Male, age 53, unknown 658.1
1848 Female, age 42, unknown 647.6
2849 Male, age 72, unknown 601.9
2097 Female, age 72, unknown 587.2
Median raphe nucleus
nTPM: 507.4
2220 Male, age 76, midline 507.4
Periaquaductal grey, anterior
nTPM: 563.1
2502 Female, age 75, unknown 641.5
1947 Male, age 18, unknown 582.3
1795 Male, age 51, unknown 465.4
Periaquaductal grey, dorsal
nTPM: 456.9
2464 Female, age 72, unknown 765.6
1831 Male, age 72, unknown 483.3
1840 Male, age 53, unknown 304.0
2850 Male, age 76, both hemispheres 274.8
Periaquaductal grey, lateral
nTPM: 503.3
2272 Male, age 74, both hemispheres 604.5
2053 Male, age 18, unknown 587.4
2140 Male, age 76, both hemispheres 318.2
Pretectal area
nTPM: 639.2
2316 Male, age 76, right hemisphere 958.0
1815 Male, age 53, unknown 908.8
2407 Male, age 75, both hemispheres 882.6
1817 Female, age 42, unknown 666.2
2007 Male, age 72, unknown 660.4
2825 Male, age 18, unknown 640.3
2273 Male, age 74, both hemispheres 571.9
2667 Female, age 75, unknown 514.0
2224 Female, age 72, unknown 495.4
1816 Male, age 51, unknown 366.9
1944 Female, age 72, unknown 366.3
Red nucleus
nTPM: 1291.5
1865 Male, age 51, unknown 1552.3
1904 Male, age 53, unknown 1541.3
1821 Female, age 72, unknown 1462.2
2823 Male, age 76, right hemisphere 1442.8
2769 Male, age 72, unknown 1436.9
2227 Male, age 72, unknown 1418.9
2785 Male, age 18, unknown 1333.9
2503 Female, age 72, unknown 1267.2
1954 Female, age 42, unknown 1192.6
2588 Male, age 74, left hemisphere 1108.4
2725 Female, age 75, unknown 872.3
2584 Male, age 75, left hemisphere 869.1
Substantia nigra
nTPM: 713.1
1851 Male, age 51, unknown 931.8
2590 Female, age 75, unknown 891.7
2583 Male, age 75, right hemisphere 883.9
2409 Female, age 72, unknown 856.6
1889 Female, age 72, unknown 742.5
2699 Male, age 18, unknown 667.0
2241 Male, age 72, unknown 600.1
1941 Male, age 53, unknown 555.9
1916 Female, age 42, unknown 540.1
2665 Male, age 74, both hemispheres 460.8
Superior colliculus
nTPM: 862.8
1995 Male, age 72, unknown 1387.7
1913 Female, age 42, unknown 1268.1
1895 Male, age 76, right hemisphere 1024.7
2668 Female, age 75, unknown 950.5
1839 Male, age 51, unknown 857.5
2587 Male, age 74, left hemisphere 853.5
1796 Male, age 53, unknown 690.4
2664 Male, age 75, both hemispheres 588.9
2261 Male, age 18, unknown 507.7
2087 Female, age 72, unknown 498.8
Ventral tegmental area
nTPM: 812.4
2223 Female, age 72, unknown 1055.2
2410 Female, age 72, unknown 1053.6
1942 Male, age 51, unknown 722.1
1915 Female, age 42, unknown 713.2
2021 Male, age 53, unknown 701.9
2218 Male, age 76, both hemispheres 628.4

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

535.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 535.8
Samples: 183

Max nTPM: 2550.3
Min nTPM: 74.6
Std nTPM: 353.6
Median nTPM: 434.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2550.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2152.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2005.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1601.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1526.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1369.3
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1360.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1311.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1212.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1164.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1132.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1122.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1111.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1053.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1040.5
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1004.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 977.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 946.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 940.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 929.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 917.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 909.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 895.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 877.2
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 819.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 814.7
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 803.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 794.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 789.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 760.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 746.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 745.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 731.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 718.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 697.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 692.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 684.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 672.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 668.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 667.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 667.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 666.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 657.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 651.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 643.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 641.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 640.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 637.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 601.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 600.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 592.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 587.2
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 575.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 567.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 562.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 559.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 558.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 557.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 557.2
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 555.5
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 554.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 552.0
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 549.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 547.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 547.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 545.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 538.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 537.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 531.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 525.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 511.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 509.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 489.6
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 480.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 479.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 478.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 476.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 475.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 474.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 468.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 465.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 465.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 461.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 455.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 454.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 448.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 447.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 446.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 440.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 436.3
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 435.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 434.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 433.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 432.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 431.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 426.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 425.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 425.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 421.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 421.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 421.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 414.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 412.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 412.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 409.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 406.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 404.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 401.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 400.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 400.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 397.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 391.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 390.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 387.9
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 385.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 383.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 383.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 377.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 376.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 374.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 367.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 363.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 361.3
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 360.9
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 360.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 360.5
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 359.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 358.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 356.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 351.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 351.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 339.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 336.7
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 317.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 316.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 313.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 309.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 307.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 303.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 295.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 295.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 289.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 287.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 287.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 286.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 286.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 286.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 286.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 286.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 282.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 278.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 273.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 272.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 272.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 271.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 270.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 269.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 259.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 258.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 256.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 255.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 254.8
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 254.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 252.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 251.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 248.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 242.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 241.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 240.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 232.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 210.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 202.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 196.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 193.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 191.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 189.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 182.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 178.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 160.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 159.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 143.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 143.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 74.6
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1488.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1488.1
FF:10158-103A5 76 years, female 1488.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

533.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 533.2
Samples: 1

Max nTPM: 533.2
Min nTPM: 533.2
Sample A 533.2
Midbrain
nTPM: 195.8
Samples: 1

Max nTPM: 195.8
Min nTPM: 195.8
Sample A 195.8
Superior colliculi
nTPM: 338.6
Samples: 1

Max nTPM: 338.6
Min nTPM: 338.6
Sample A 338.6

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

636.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 607.2
Samples: 3

Max nTPM: 795.4
Min nTPM: 455.2
Sample A Female 795.4
Sample B Female 455.2
Sample C Male 571.1
Midbrain
nTPM: 518.2
Samples: 3

Max nTPM: 790.4
Min nTPM: 359.0
Sample B Female 790.4
Sample C Male 359.0
Sample D Male 405.1
Periaqueductal gray
nTPM: 512.1
Samples: 3

Max nTPM: 633.9
Min nTPM: 368.4
Sample B Female 633.9
Sample C Male 368.4
Sample D Male 534.1
Superior colliculi
nTPM: 636.0
Samples: 4

Max nTPM: 788.7
Min nTPM: 340.0
Sample A Female 785.7
Sample B Female 340.0
Sample C Male 629.6
Sample D Male 788.7

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

362.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 362.9
Samples: 4

Max nTPM: 373.5
Min nTPM: 353.5
Sample A 353.5
Sample B 362.1
Sample C 362.4
Sample D 373.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

658.4
Rat sample Sample description nTPM
Midbrain
nTPM: 658.4
Samples: 4

Max nTPM: 765.9
Min nTPM: 571.1
Sample A 571.1
Sample A 765.9
Sample A 721.4
Sample A 575.1

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