A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.5
nTPM
Monaco:
25.9
nTPM
Schmiedel:
102.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.5
HPA sample
nTPM
Memory B-cell nTPM: 15.4
Samples: 6
Max nTPM: 37.6
Min nTPM: 7.2
P10809_1017
7.2
P10809_1025
8.6
P10809_1044
37.6
P10809_1063
14.3
P10809_1092
12.8
P10809_1105
11.8
Naive B-cell nTPM: 15.5
Samples: 6
Max nTPM: 20.7
Min nTPM: 11.9
P10809_1011
15.0
P10809_1029
19.1
P10809_1048
13.6
P10809_1067
20.7
P10809_1091
12.6
P10809_1104
11.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 21.1
Samples: 4
Max nTPM: 37.0
Min nTPM: 14.0
RHH5310_R3677
14.0
RHH5218_R3590
37.0
RHH5247_R3619
15.1
RHH5276_R3648
18.3
Naive B-cell nTPM: 25.4
Samples: 4
Max nTPM: 36.6
Min nTPM: 18.4
RHH5308_R3675
18.4
RHH5216_R3588
36.6
RHH5245_R3617
27.7
RHH5274_R3646
19.0
Non-switched memory B-cell nTPM: 25.9
Samples: 4
Max nTPM: 36.4
Min nTPM: 16.9
RHH5309_R3676
16.9
RHH5217_R3589
36.4
RHH5246_R3618
24.1
RHH5275_R3647
26.1
Plasmablast nTPM: 21.5
Samples: 4
Max nTPM: 28.5
Min nTPM: 15.6
RHH5312_R3679
23.9
RHH5220_R3592
18.0
RHH5249_R3621
15.6
RHH5278_R3650
28.5
Switched memory B-cell nTPM: 25.6
Samples: 4
Max nTPM: 32.6
Min nTPM: 19.7
RHH5311_R3678
19.7
RHH5219_R3591
27.9
RHH5248_R3620
32.6
RHH5277_R3649
22.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.0
Schmiedel sample id
TPM
Naive B-cell TPM: 102.0
Samples: 91
Max TPM: 172.1
Min TPM: 64.4
B_CELL_NAIVE_1
172.1
B_CELL_NAIVE_2
170.6
B_CELL_NAIVE_3
144.1
B_CELL_NAIVE_4
137.6
B_CELL_NAIVE_5
127.4
B_CELL_NAIVE_6
126.7
B_CELL_NAIVE_7
126.2
B_CELL_NAIVE_8
125.3
B_CELL_NAIVE_9
123.4
B_CELL_NAIVE_10
121.7
B_CELL_NAIVE_11
119.8
B_CELL_NAIVE_12
119.5
B_CELL_NAIVE_13
118.9
B_CELL_NAIVE_14
116.4
B_CELL_NAIVE_15
115.6
B_CELL_NAIVE_16
113.2
B_CELL_NAIVE_17
113.2
B_CELL_NAIVE_18
113.2
B_CELL_NAIVE_19
112.7
B_CELL_NAIVE_20
112.4
B_CELL_NAIVE_21
112.1
B_CELL_NAIVE_22
111.9
B_CELL_NAIVE_23
111.2
B_CELL_NAIVE_24
109.5
B_CELL_NAIVE_25
108.6
B_CELL_NAIVE_26
108.5
B_CELL_NAIVE_27
108.4
B_CELL_NAIVE_28
108.1
B_CELL_NAIVE_29
107.5
B_CELL_NAIVE_30
107.0
B_CELL_NAIVE_31
106.9
B_CELL_NAIVE_32
106.8
B_CELL_NAIVE_33
106.6
B_CELL_NAIVE_34
106.5
B_CELL_NAIVE_35
106.4
B_CELL_NAIVE_36
106.3
B_CELL_NAIVE_37
105.5
B_CELL_NAIVE_38
104.2
B_CELL_NAIVE_39
104.2
B_CELL_NAIVE_40
103.8
B_CELL_NAIVE_41
103.7
B_CELL_NAIVE_42
103.0
B_CELL_NAIVE_43
102.4
B_CELL_NAIVE_44
102.4
B_CELL_NAIVE_45
102.3
B_CELL_NAIVE_46
101.6
B_CELL_NAIVE_47
99.9
B_CELL_NAIVE_48
99.2
B_CELL_NAIVE_49
99.2
B_CELL_NAIVE_50
98.7
B_CELL_NAIVE_51
98.5
B_CELL_NAIVE_52
97.5
B_CELL_NAIVE_53
97.3
B_CELL_NAIVE_54
96.2
B_CELL_NAIVE_55
96.1
B_CELL_NAIVE_56
95.4
B_CELL_NAIVE_57
94.4
B_CELL_NAIVE_58
93.6
B_CELL_NAIVE_59
93.5
B_CELL_NAIVE_60
93.5
B_CELL_NAIVE_61
93.5
B_CELL_NAIVE_62
93.4
B_CELL_NAIVE_63
93.3
B_CELL_NAIVE_64
93.1
B_CELL_NAIVE_65
92.8
B_CELL_NAIVE_66
92.8
B_CELL_NAIVE_67
91.7
B_CELL_NAIVE_68
91.3
B_CELL_NAIVE_69
91.0
B_CELL_NAIVE_70
90.8
B_CELL_NAIVE_71
90.7
B_CELL_NAIVE_72
90.1
B_CELL_NAIVE_73
90.0
B_CELL_NAIVE_74
89.6
B_CELL_NAIVE_75
89.5
B_CELL_NAIVE_76
88.6
B_CELL_NAIVE_77
86.2
B_CELL_NAIVE_78
86.1
B_CELL_NAIVE_79
85.4
B_CELL_NAIVE_80
82.8
B_CELL_NAIVE_81
81.8
B_CELL_NAIVE_82
81.5
B_CELL_NAIVE_83
79.7
B_CELL_NAIVE_84
78.8
B_CELL_NAIVE_85
77.2
B_CELL_NAIVE_86
77.0
B_CELL_NAIVE_87
76.3
B_CELL_NAIVE_88
75.9
B_CELL_NAIVE_89
73.9
B_CELL_NAIVE_90
68.1
B_CELL_NAIVE_91
64.4
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The Human Protein Atlas project is funded
