A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.3
nTPM
Monaco:
64.6
nTPM
Schmiedel:
426.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.3
HPA sample
nTPM
NK-cell nTPM: 26.3
Samples: 6
Max nTPM: 82.7
Min nTPM: 12.2
P10809_1013
12.2
P10809_1033
19.4
P10809_1052
13.9
P10809_1071
16.0
P10809_1093
82.7
P10809_1103
13.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.6
Monaco sample
nTPM
NK-cell nTPM: 64.7
Samples: 4
Max nTPM: 73.4
Min nTPM: 58.4
RHH5316_R3683
60.9
RHH5224_R3596
65.9
RHH5253_R3625
73.4
RHH5282_R3654
58.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
426.0
Schmiedel sample id
TPM
NK-cell TPM: 426.0
Samples: 90
Max TPM: 628.5
Min TPM: 173.2
NK_1
628.5
NK_2
564.0
NK_3
553.8
NK_4
551.6
NK_5
532.4
NK_6
521.7
NK_7
516.9
NK_8
516.7
NK_9
510.8
NK_10
506.9
NK_11
506.3
NK_12
499.5
NK_13
492.5
NK_14
486.5
NK_15
483.1
NK_16
482.7
NK_17
470.9
NK_18
470.7
NK_19
470.0
NK_20
469.0
NK_21
467.0
NK_22
466.1
NK_23
465.5
NK_24
462.8
NK_25
460.5
NK_26
457.7
NK_27
455.4
NK_28
454.5
NK_29
453.3
NK_30
451.2
NK_31
450.9
NK_32
448.4
NK_33
448.2
NK_34
442.0
NK_35
440.9
NK_36
440.3
NK_37
438.9
NK_38
438.9
NK_39
437.9
NK_40
436.5
NK_41
434.3
NK_42
432.5
NK_43
432.1
NK_44
431.9
NK_45
429.0
NK_46
425.6
NK_47
425.2
NK_48
422.9
NK_49
421.7
NK_50
418.8
NK_51
413.8
NK_52
411.9
NK_53
411.3
NK_54
410.5
NK_55
408.1
NK_56
408.1
NK_57
406.6
NK_58
404.3
NK_59
403.5
NK_60
402.7
NK_61
396.1
NK_62
394.2
NK_63
393.4
NK_64
391.2
NK_65
388.8
NK_66
381.0
NK_67
380.4
NK_68
379.6
NK_69
378.5
NK_70
378.1
NK_71
378.0
NK_72
374.1
NK_73
373.9
NK_74
372.7
NK_75
370.8
NK_76
370.5
NK_77
368.9
NK_78
367.5
NK_79
366.2
NK_80
362.6
NK_81
355.4
NK_82
354.1
NK_83
351.4
NK_84
335.5
NK_85
328.1
NK_86
324.4
NK_87
318.0
NK_88
316.0
NK_89
310.5
NK_90
173.2
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