A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.8
nTPM
Monaco:
46.4
nTPM
Schmiedel:
195.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.8
HPA sample
nTPM
Classical monocyte nTPM: 20.8
Samples: 6
Max nTPM: 29.7
Min nTPM: 8.3
P10809_1003
8.3
P10809_1020
12.6
P10809_1039
20.9
P10809_1058
27.5
P10809_1080
29.7
P10809_1107
26.0
Intermediate monocyte nTPM: 18.5
Samples: 6
Max nTPM: 39.3
Min nTPM: 8.2
P10809_1004
8.6
P10809_1023
8.2
P10809_1042
13.9
P10809_1061
17.8
P10809_1081
39.3
P10809_1108
23.3
Non-classical monocyte nTPM: 17.2
Samples: 5
Max nTPM: 29.4
Min nTPM: 7.6
P10809_1005
7.6
P10809_1053
10.2
P10809_1072
17.3
P10809_1082
29.4
P10809_1109
21.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.4
Monaco sample
nTPM
Classical monocyte nTPM: 37.4
Samples: 4
Max nTPM: 56.2
Min nTPM: 29.0
RHH5313_R3680
29.9
RHH5221_R3593
56.2
RHH5250_R3622
29.0
RHH5279_R3651
34.5
Intermediate monocyte nTPM: 46.4
Samples: 4
Max nTPM: 62.7
Min nTPM: 36.5
RHH5314_R3681
36.5
RHH5222_R3594
62.7
RHH5251_R3623
38.1
RHH5280_R3652
48.3
Non-classical monocyte nTPM: 42.9
Samples: 4
Max nTPM: 67.4
Min nTPM: 32.2
RHH5315_R3682
34.2
RHH5223_R3595
67.4
RHH5252_R3624
32.2
RHH5281_R3653
37.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
195.7
Schmiedel sample id
TPM
Classical monocyte TPM: 122.7
Samples: 91
Max TPM: 268.3
Min TPM: 64.3
MONOCYTES_1
268.3
MONOCYTES_2
218.9
MONOCYTES_3
193.2
MONOCYTES_4
183.4
MONOCYTES_5
172.1
MONOCYTES_6
172.0
MONOCYTES_7
168.0
MONOCYTES_8
167.5
MONOCYTES_9
160.3
MONOCYTES_10
157.9
MONOCYTES_11
156.9
MONOCYTES_12
155.8
MONOCYTES_13
152.9
MONOCYTES_14
147.5
MONOCYTES_15
145.8
MONOCYTES_16
143.7
MONOCYTES_17
142.0
MONOCYTES_18
141.9
MONOCYTES_19
141.2
MONOCYTES_20
140.3
MONOCYTES_21
134.3
MONOCYTES_22
132.8
MONOCYTES_23
131.9
MONOCYTES_24
130.4
MONOCYTES_25
130.2
MONOCYTES_26
129.5
MONOCYTES_27
127.8
MONOCYTES_28
127.4
MONOCYTES_29
127.1
MONOCYTES_30
127.0
MONOCYTES_31
126.0
MONOCYTES_32
125.4
MONOCYTES_33
125.1
MONOCYTES_34
124.2
MONOCYTES_35
122.7
MONOCYTES_36
122.6
MONOCYTES_37
122.4
MONOCYTES_38
121.3
MONOCYTES_39
121.0
MONOCYTES_40
120.8
MONOCYTES_41
120.4
MONOCYTES_42
120.3
MONOCYTES_43
119.8
MONOCYTES_44
119.3
MONOCYTES_45
118.2
MONOCYTES_46
118.2
MONOCYTES_47
117.2
MONOCYTES_48
116.9
MONOCYTES_49
116.8
MONOCYTES_50
116.4
MONOCYTES_51
115.0
MONOCYTES_52
113.4
MONOCYTES_53
112.9
MONOCYTES_54
112.9
MONOCYTES_55
111.3
MONOCYTES_56
111.1
MONOCYTES_57
110.8
MONOCYTES_58
110.8
MONOCYTES_59
110.0
MONOCYTES_60
109.9
MONOCYTES_61
109.4
MONOCYTES_62
109.3
MONOCYTES_63
109.0
MONOCYTES_64
107.9
MONOCYTES_65
107.7
MONOCYTES_66
106.4
MONOCYTES_67
105.5
MONOCYTES_68
104.7
MONOCYTES_69
104.2
MONOCYTES_70
103.7
MONOCYTES_71
102.8
MONOCYTES_72
102.1
MONOCYTES_73
101.9
MONOCYTES_74
101.0
MONOCYTES_75
100.5
MONOCYTES_76
99.9
MONOCYTES_77
98.9
MONOCYTES_78
97.6
MONOCYTES_79
96.8
MONOCYTES_80
96.0
MONOCYTES_81
93.5
MONOCYTES_82
93.0
MONOCYTES_83
92.6
MONOCYTES_84
91.9
MONOCYTES_85
88.7
MONOCYTES_86
88.6
MONOCYTES_87
87.8
MONOCYTES_88
84.6
MONOCYTES_89
81.6
MONOCYTES_90
76.6
MONOCYTES_91
64.3
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Non-classical monocyte TPM: 195.7
Samples: 90
Max TPM: 417.5
Min TPM: 108.9
M2_1
417.5
M2_2
332.5
M2_3
306.5
M2_4
282.3
M2_5
265.4
M2_6
261.2
M2_7
256.0
M2_8
253.6
M2_9
253.0
M2_10
247.8
M2_11
245.1
M2_12
240.3
M2_13
238.2
M2_14
233.5
M2_15
228.1
M2_16
227.2
M2_17
227.1
M2_18
225.0
M2_19
224.1
M2_20
220.9
M2_21
220.7
M2_22
220.7
M2_23
220.6
M2_24
218.0
M2_25
212.6
M2_26
206.9
M2_27
205.8
M2_28
205.2
M2_29
204.7
M2_30
204.1
M2_31
203.7
M2_32
203.5
M2_33
203.4
M2_34
202.3
M2_35
201.5
M2_36
201.1
M2_37
199.0
M2_38
198.9
M2_39
198.7
M2_40
198.4
M2_41
197.8
M2_42
197.3
M2_43
193.2
M2_44
191.6
M2_45
190.3
M2_46
190.1
M2_47
190.1
M2_48
189.9
M2_49
189.0
M2_50
185.9
M2_51
184.7
M2_52
183.8
M2_53
183.0
M2_54
182.5
M2_55
182.3
M2_56
181.6
M2_57
181.1
M2_58
180.9
M2_59
179.7
M2_60
179.0
M2_61
177.6
M2_62
177.5
M2_63
176.9
M2_64
174.2
M2_65
171.0
M2_66
168.6
M2_67
167.4
M2_68
166.9
M2_69
166.0
M2_70
165.7
M2_71
162.3
M2_72
160.8
M2_73
160.3
M2_74
154.5
M2_75
154.4
M2_76
153.3
M2_77
151.5
M2_78
151.2
M2_79
147.2
M2_80
146.2
M2_81
143.5
M2_82
142.7
M2_83
141.3
M2_84
136.1
M2_85
133.1
M2_86
133.1
M2_87
130.5
M2_88
127.2
M2_89
117.1
M2_90
108.9
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