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  • RPL4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:658.3 nTPM
HPA Brain:166.4 nTPM
GTEx:658.3 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:451.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 61.2
2816 Male, age 47, midline 89.4
2048 Male, age 55, midline 79.6
2565 Male, age 75, midline 55.2
1981 Female, age 72, midline 54.1
2194 Female, age 79, both hemispheres 28.0
Cervical spinal cord, dorsal horn
nTPM: 166.4
2296 Male, age 66, both hemispheres 258.0
1877 Male, age 55, unknown 228.0
2721 Male, age 90, both hemispheres 159.9
2173 Female, age 72, unknown 130.5
2297 Male, age 75, both hemispheres 116.2
2069 Male, age 47, both hemispheres 105.6
Cervical spinal cord, ventral horn
nTPM: 146.3
2480 Male, age 75, both hemispheres 298.1
2295 Male, age 66, both hemispheres 200.9
2098 Female, age 72, unknown 158.6
2809 Male, age 90, both hemispheres 122.3
2820 Female, age 79, both hemispheres 52.4
2068 Male, age 55, unknown 45.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

658.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 658.3
Samples: 204

Max nTPM: 1260.6
Min nTPM: 192.8
Std nTPM: 192.1
Median nTPM: 630.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1260.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1259.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1252.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1245.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1203.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1138.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1099.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1011.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1002.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 994.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 990.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 964.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 962.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 959.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 949.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 921.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 921.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 914.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 904.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 891.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 888.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 881.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 879.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 878.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 873.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 867.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 864.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 853.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 853.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 851.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 845.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 842.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 839.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 839.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 831.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 829.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 828.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 822.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 819.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 812.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 810.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 810.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 807.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 805.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 802.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 801.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 797.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 795.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 785.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 779.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 775.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 770.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 760.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 759.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 755.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 753.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 753.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 752.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 750.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 746.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 741.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 739.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 735.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 734.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 734.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 731.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 727.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 725.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 724.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 716.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 714.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 712.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 710.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 709.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 707.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 703.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 702.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 701.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 699.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 693.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 689.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 686.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 682.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 677.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 677.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 675.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 674.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 670.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 670.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 668.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 667.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 658.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 654.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 652.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 652.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 651.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 648.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 647.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 640.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 637.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 636.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 632.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 628.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 628.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 627.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 627.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 625.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 621.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 621.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 620.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 618.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 617.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 614.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 610.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 608.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 606.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 603.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 603.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 603.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 596.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 596.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 596.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 591.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 590.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 577.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 576.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 574.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 573.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 572.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 570.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 569.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 569.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 567.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 565.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 565.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 564.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 562.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 556.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 555.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 555.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 554.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 549.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 548.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 547.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 545.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 542.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 542.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 539.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 538.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 531.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 529.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 529.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 529.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 519.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 518.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 517.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 516.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 513.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 509.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 509.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 503.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 501.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 501.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 500.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 498.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 497.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 492.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 488.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 488.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 485.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 485.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 482.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 482.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 478.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 471.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 470.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 469.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 458.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 458.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 456.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 451.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 450.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 448.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 442.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 441.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 439.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 437.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 435.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 429.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 422.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 403.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 402.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 401.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 380.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 377.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 371.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 360.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 357.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 357.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 316.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 279.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 271.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 239.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 192.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 19.9
FF:10181-103D1 60 years, female 20.6
FF:10159-103A6 76 years, female 19.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

451.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 451.9
Samples: 4

Max nTPM: 660.2
Min nTPM: 293.5
Sample A Female 293.5
Sample B Female 498.9
Sample C Male 660.2
Sample D Male 355.1
Ventral spinal cord
nTPM: 395.1
Samples: 4

Max nTPM: 438.9
Min nTPM: 320.0
Sample A Female 320.0
Sample B Female 404.1
Sample C Male 438.9
Sample D Male 417.3

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