A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
713.5
nTPM
Monaco:
1362.6
nTPM
Schmiedel:
685.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
713.5
HPA sample
nTPM
Memory B-cell nTPM: 713.5
Samples: 6
Max nTPM: 787.7
Min nTPM: 620.5
P10809_1017
787.7
P10809_1025
762.0
P10809_1044
770.9
P10809_1063
675.6
P10809_1092
664.3
P10809_1105
620.5
Naive B-cell nTPM: 647.7
Samples: 6
Max nTPM: 1456.0
Min nTPM: 424.6
P10809_1011
473.5
P10809_1029
582.5
P10809_1048
1456.0
P10809_1067
424.6
P10809_1091
480.1
P10809_1104
469.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1362.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 869.7
Samples: 4
Max nTPM: 1231.0
Min nTPM: 579.7
RHH5310_R3677
1231.0
RHH5218_R3590
859.1
RHH5247_R3619
808.9
RHH5276_R3648
579.7
Naive B-cell nTPM: 805.0
Samples: 4
Max nTPM: 1110.7
Min nTPM: 419.8
RHH5308_R3675
1110.7
RHH5216_R3588
866.2
RHH5245_R3617
419.8
RHH5274_R3646
823.2
Non-switched memory B-cell nTPM: 1037.0
Samples: 4
Max nTPM: 1393.2
Min nTPM: 789.9
RHH5309_R3676
1393.2
RHH5217_R3589
991.1
RHH5246_R3618
973.6
RHH5275_R3647
789.9
Plasmablast nTPM: 1362.6
Samples: 4
Max nTPM: 1537.7
Min nTPM: 1093.7
RHH5312_R3679
1361.1
RHH5220_R3592
1458.0
RHH5249_R3621
1537.7
RHH5278_R3650
1093.7
Switched memory B-cell nTPM: 1319.4
Samples: 4
Max nTPM: 1496.2
Min nTPM: 981.6
RHH5311_R3678
1341.4
RHH5219_R3591
1458.2
RHH5248_R3620
1496.2
RHH5277_R3649
981.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
685.6
Schmiedel sample id
TPM
Naive B-cell TPM: 685.6
Samples: 91
Max TPM: 831.0
Min TPM: 381.6
B_CELL_NAIVE_1
831.0
B_CELL_NAIVE_2
806.5
B_CELL_NAIVE_3
788.7
B_CELL_NAIVE_4
784.0
B_CELL_NAIVE_5
780.9
B_CELL_NAIVE_6
775.8
B_CELL_NAIVE_7
775.2
B_CELL_NAIVE_8
768.7
B_CELL_NAIVE_9
763.0
B_CELL_NAIVE_10
760.5
B_CELL_NAIVE_11
752.6
B_CELL_NAIVE_12
749.4
B_CELL_NAIVE_13
748.3
B_CELL_NAIVE_14
747.2
B_CELL_NAIVE_15
741.9
B_CELL_NAIVE_16
741.9
B_CELL_NAIVE_17
740.5
B_CELL_NAIVE_18
740.1
B_CELL_NAIVE_19
737.5
B_CELL_NAIVE_20
735.0
B_CELL_NAIVE_21
735.0
B_CELL_NAIVE_22
729.4
B_CELL_NAIVE_23
727.4
B_CELL_NAIVE_24
727.3
B_CELL_NAIVE_25
726.4
B_CELL_NAIVE_26
726.0
B_CELL_NAIVE_27
724.3
B_CELL_NAIVE_28
722.5
B_CELL_NAIVE_29
722.4
B_CELL_NAIVE_30
722.2
B_CELL_NAIVE_31
719.0
B_CELL_NAIVE_32
718.5
B_CELL_NAIVE_33
718.0
B_CELL_NAIVE_34
714.7
B_CELL_NAIVE_35
709.1
B_CELL_NAIVE_36
706.5
B_CELL_NAIVE_37
704.1
B_CELL_NAIVE_38
702.8
B_CELL_NAIVE_39
702.5
B_CELL_NAIVE_40
702.0
B_CELL_NAIVE_41
701.7
B_CELL_NAIVE_42
698.7
B_CELL_NAIVE_43
697.5
B_CELL_NAIVE_44
695.9
B_CELL_NAIVE_45
695.7
B_CELL_NAIVE_46
694.9
B_CELL_NAIVE_47
693.5
B_CELL_NAIVE_48
689.6
B_CELL_NAIVE_49
687.6
B_CELL_NAIVE_50
685.0
B_CELL_NAIVE_51
684.5
B_CELL_NAIVE_52
683.9
B_CELL_NAIVE_53
679.8
B_CELL_NAIVE_54
677.3
B_CELL_NAIVE_55
677.2
B_CELL_NAIVE_56
674.5
B_CELL_NAIVE_57
672.3
B_CELL_NAIVE_58
669.3
B_CELL_NAIVE_59
669.1
B_CELL_NAIVE_60
666.0
B_CELL_NAIVE_61
663.9
B_CELL_NAIVE_62
663.0
B_CELL_NAIVE_63
662.8
B_CELL_NAIVE_64
662.1
B_CELL_NAIVE_65
657.2
B_CELL_NAIVE_66
656.3
B_CELL_NAIVE_67
655.4
B_CELL_NAIVE_68
651.6
B_CELL_NAIVE_69
651.2
B_CELL_NAIVE_70
649.5
B_CELL_NAIVE_71
649.0
B_CELL_NAIVE_72
647.9
B_CELL_NAIVE_73
642.7
B_CELL_NAIVE_74
641.1
B_CELL_NAIVE_75
640.1
B_CELL_NAIVE_76
631.8
B_CELL_NAIVE_77
629.6
B_CELL_NAIVE_78
624.2
B_CELL_NAIVE_79
624.0
B_CELL_NAIVE_80
616.1
B_CELL_NAIVE_81
614.7
B_CELL_NAIVE_82
612.6
B_CELL_NAIVE_83
610.4
B_CELL_NAIVE_84
593.9
B_CELL_NAIVE_85
577.9
B_CELL_NAIVE_86
574.5
B_CELL_NAIVE_87
558.5
B_CELL_NAIVE_88
556.1
B_CELL_NAIVE_89
544.7
B_CELL_NAIVE_90
518.3
B_CELL_NAIVE_91
381.6
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