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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • RPL4
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:713.5 nTPM
Monaco:1362.6 nTPM
Schmiedel:685.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

713.5
HPA sample nTPM
Memory B-cell
nTPM: 713.5
Samples: 6

Max nTPM: 787.7
Min nTPM: 620.5
P10809_1017 787.7
P10809_1025 762.0
P10809_1044 770.9
P10809_1063 675.6
P10809_1092 664.3
P10809_1105 620.5
Naive B-cell
nTPM: 647.7
Samples: 6

Max nTPM: 1456.0
Min nTPM: 424.6
P10809_1011 473.5
P10809_1029 582.5
P10809_1048 1456.0
P10809_1067 424.6
P10809_1091 480.1
P10809_1104 469.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1362.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 869.7
Samples: 4

Max nTPM: 1231.0
Min nTPM: 579.7
RHH5310_R3677 1231.0
RHH5218_R3590 859.1
RHH5247_R3619 808.9
RHH5276_R3648 579.7
Naive B-cell
nTPM: 805.0
Samples: 4

Max nTPM: 1110.7
Min nTPM: 419.8
RHH5308_R3675 1110.7
RHH5216_R3588 866.2
RHH5245_R3617 419.8
RHH5274_R3646 823.2
Non-switched memory B-cell
nTPM: 1037.0
Samples: 4

Max nTPM: 1393.2
Min nTPM: 789.9
RHH5309_R3676 1393.2
RHH5217_R3589 991.1
RHH5246_R3618 973.6
RHH5275_R3647 789.9
Plasmablast
nTPM: 1362.6
Samples: 4

Max nTPM: 1537.7
Min nTPM: 1093.7
RHH5312_R3679 1361.1
RHH5220_R3592 1458.0
RHH5249_R3621 1537.7
RHH5278_R3650 1093.7
Switched memory B-cell
nTPM: 1319.4
Samples: 4

Max nTPM: 1496.2
Min nTPM: 981.6
RHH5311_R3678 1341.4
RHH5219_R3591 1458.2
RHH5248_R3620 1496.2
RHH5277_R3649 981.6

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

685.6
Schmiedel sample id TPM
Naive B-cell
TPM: 685.6
Samples: 91

Max TPM: 831.0
Min TPM: 381.6
B_CELL_NAIVE_1 831.0
B_CELL_NAIVE_2 806.5
B_CELL_NAIVE_3 788.7
B_CELL_NAIVE_4 784.0
B_CELL_NAIVE_5 780.9
B_CELL_NAIVE_6 775.8
B_CELL_NAIVE_7 775.2
B_CELL_NAIVE_8 768.7
B_CELL_NAIVE_9 763.0
B_CELL_NAIVE_10 760.5
B_CELL_NAIVE_11 752.6
B_CELL_NAIVE_12 749.4
B_CELL_NAIVE_13 748.3
B_CELL_NAIVE_14 747.2
B_CELL_NAIVE_15 741.9
B_CELL_NAIVE_16 741.9
B_CELL_NAIVE_17 740.5
B_CELL_NAIVE_18 740.1
B_CELL_NAIVE_19 737.5
B_CELL_NAIVE_20 735.0
B_CELL_NAIVE_21 735.0
B_CELL_NAIVE_22 729.4
B_CELL_NAIVE_23 727.4
B_CELL_NAIVE_24 727.3
B_CELL_NAIVE_25 726.4
B_CELL_NAIVE_26 726.0
B_CELL_NAIVE_27 724.3
B_CELL_NAIVE_28 722.5
B_CELL_NAIVE_29 722.4
B_CELL_NAIVE_30 722.2
B_CELL_NAIVE_31 719.0
B_CELL_NAIVE_32 718.5
B_CELL_NAIVE_33 718.0
B_CELL_NAIVE_34 714.7
B_CELL_NAIVE_35 709.1
B_CELL_NAIVE_36 706.5
B_CELL_NAIVE_37 704.1
B_CELL_NAIVE_38 702.8
B_CELL_NAIVE_39 702.5
B_CELL_NAIVE_40 702.0
B_CELL_NAIVE_41 701.7
B_CELL_NAIVE_42 698.7
B_CELL_NAIVE_43 697.5
B_CELL_NAIVE_44 695.9
B_CELL_NAIVE_45 695.7
B_CELL_NAIVE_46 694.9
B_CELL_NAIVE_47 693.5
B_CELL_NAIVE_48 689.6
B_CELL_NAIVE_49 687.6
B_CELL_NAIVE_50 685.0
B_CELL_NAIVE_51 684.5
B_CELL_NAIVE_52 683.9
B_CELL_NAIVE_53 679.8
B_CELL_NAIVE_54 677.3
B_CELL_NAIVE_55 677.2
B_CELL_NAIVE_56 674.5
B_CELL_NAIVE_57 672.3
B_CELL_NAIVE_58 669.3
B_CELL_NAIVE_59 669.1
B_CELL_NAIVE_60 666.0
B_CELL_NAIVE_61 663.9
B_CELL_NAIVE_62 663.0
B_CELL_NAIVE_63 662.8
B_CELL_NAIVE_64 662.1
B_CELL_NAIVE_65 657.2
B_CELL_NAIVE_66 656.3
B_CELL_NAIVE_67 655.4
B_CELL_NAIVE_68 651.6
B_CELL_NAIVE_69 651.2
B_CELL_NAIVE_70 649.5
B_CELL_NAIVE_71 649.0
B_CELL_NAIVE_72 647.9
B_CELL_NAIVE_73 642.7
B_CELL_NAIVE_74 641.1
B_CELL_NAIVE_75 640.1
B_CELL_NAIVE_76 631.8
B_CELL_NAIVE_77 629.6
B_CELL_NAIVE_78 624.2
B_CELL_NAIVE_79 624.0
B_CELL_NAIVE_80 616.1
B_CELL_NAIVE_81 614.7
B_CELL_NAIVE_82 612.6
B_CELL_NAIVE_83 610.4
B_CELL_NAIVE_84 593.9
B_CELL_NAIVE_85 577.9
B_CELL_NAIVE_86 574.5
B_CELL_NAIVE_87 558.5
B_CELL_NAIVE_88 556.1
B_CELL_NAIVE_89 544.7
B_CELL_NAIVE_90 518.3
B_CELL_NAIVE_91 381.6
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