A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
453.4
nTPM
Monaco:
936.5
nTPM
Schmiedel:
483.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
453.4
HPA sample
nTPM
Classical monocyte nTPM: 453.4
Samples: 6
Max nTPM: 1042.0
Min nTPM: 252.9
P10809_1003
1042.0
P10809_1020
425.2
P10809_1039
386.1
P10809_1058
281.2
P10809_1080
252.9
P10809_1107
333.1
Intermediate monocyte nTPM: 370.3
Samples: 6
Max nTPM: 455.9
Min nTPM: 264.6
P10809_1004
381.8
P10809_1023
428.9
P10809_1042
455.9
P10809_1061
333.6
P10809_1081
264.6
P10809_1108
357.3
Non-classical monocyte nTPM: 362.5
Samples: 5
Max nTPM: 445.5
Min nTPM: 227.1
P10809_1005
445.5
P10809_1053
331.1
P10809_1072
407.7
P10809_1082
227.1
P10809_1109
401.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
936.5
Monaco sample
nTPM
Classical monocyte nTPM: 936.5
Samples: 4
Max nTPM: 1310.4
Min nTPM: 681.2
RHH5313_R3680
681.2
RHH5221_R3593
795.4
RHH5250_R3622
1310.4
RHH5279_R3651
958.9
Intermediate monocyte nTPM: 758.1
Samples: 4
Max nTPM: 981.6
Min nTPM: 457.5
RHH5314_R3681
806.6
RHH5222_R3594
457.5
RHH5251_R3623
786.6
RHH5280_R3652
981.6
Non-classical monocyte nTPM: 621.6
Samples: 4
Max nTPM: 782.7
Min nTPM: 336.8
RHH5315_R3682
636.8
RHH5223_R3595
336.8
RHH5252_R3624
730.0
RHH5281_R3653
782.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
483.3
Schmiedel sample id
TPM
Classical monocyte TPM: 483.3
Samples: 91
Max TPM: 593.9
Min TPM: 362.2
MONOCYTES_1
593.9
MONOCYTES_2
568.1
MONOCYTES_3
560.8
MONOCYTES_4
557.5
MONOCYTES_5
549.3
MONOCYTES_6
549.0
MONOCYTES_7
546.3
MONOCYTES_8
544.8
MONOCYTES_9
537.2
MONOCYTES_10
536.1
MONOCYTES_11
533.0
MONOCYTES_12
526.5
MONOCYTES_13
526.4
MONOCYTES_14
526.0
MONOCYTES_15
525.1
MONOCYTES_16
524.9
MONOCYTES_17
523.8
MONOCYTES_18
518.9
MONOCYTES_19
517.9
MONOCYTES_20
516.5
MONOCYTES_21
515.7
MONOCYTES_22
513.7
MONOCYTES_23
513.0
MONOCYTES_24
512.9
MONOCYTES_25
510.9
MONOCYTES_26
510.8
MONOCYTES_27
510.2
MONOCYTES_28
508.5
MONOCYTES_29
506.0
MONOCYTES_30
505.2
MONOCYTES_31
503.8
MONOCYTES_32
502.7
MONOCYTES_33
500.6
MONOCYTES_34
498.1
MONOCYTES_35
496.5
MONOCYTES_36
495.2
MONOCYTES_37
494.1
MONOCYTES_38
494.1
MONOCYTES_39
493.9
MONOCYTES_40
493.9
MONOCYTES_41
492.8
MONOCYTES_42
491.0
MONOCYTES_43
490.3
MONOCYTES_44
489.7
MONOCYTES_45
489.1
MONOCYTES_46
485.2
MONOCYTES_47
484.7
MONOCYTES_48
484.1
MONOCYTES_49
483.6
MONOCYTES_50
482.4
MONOCYTES_51
482.4
MONOCYTES_52
481.8
MONOCYTES_53
480.5
MONOCYTES_54
480.1
MONOCYTES_55
478.9
MONOCYTES_56
478.9
MONOCYTES_57
478.0
MONOCYTES_58
474.6
MONOCYTES_59
474.5
MONOCYTES_60
473.8
MONOCYTES_61
473.3
MONOCYTES_62
471.5
MONOCYTES_63
470.5
MONOCYTES_64
469.2
MONOCYTES_65
468.1
MONOCYTES_66
466.5
MONOCYTES_67
465.3
MONOCYTES_68
461.3
MONOCYTES_69
461.1
MONOCYTES_70
455.7
MONOCYTES_71
452.2
MONOCYTES_72
451.0
MONOCYTES_73
442.9
MONOCYTES_74
436.0
MONOCYTES_75
433.8
MONOCYTES_76
432.4
MONOCYTES_77
429.6
MONOCYTES_78
429.5
MONOCYTES_79
429.1
MONOCYTES_80
425.6
MONOCYTES_81
425.1
MONOCYTES_82
423.9
MONOCYTES_83
421.3
MONOCYTES_84
418.9
MONOCYTES_85
416.0
MONOCYTES_86
407.4
MONOCYTES_87
399.4
MONOCYTES_88
390.8
MONOCYTES_89
388.3
MONOCYTES_90
380.0
MONOCYTES_91
362.2
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Non-classical monocyte TPM: 470.6
Samples: 90
Max TPM: 621.9
Min TPM: 376.1
M2_1
621.9
M2_2
554.2
M2_3
539.4
M2_4
537.9
M2_5
535.2
M2_6
532.5
M2_7
531.2
M2_8
526.4
M2_9
522.9
M2_10
522.3
M2_11
520.9
M2_12
519.7
M2_13
519.4
M2_14
516.0
M2_15
514.0
M2_16
512.6
M2_17
506.6
M2_18
502.9
M2_19
502.5
M2_20
502.3
M2_21
499.6
M2_22
499.3
M2_23
497.7
M2_24
496.4
M2_25
494.7
M2_26
493.5
M2_27
492.5
M2_28
491.3
M2_29
488.6
M2_30
484.0
M2_31
484.0
M2_32
483.3
M2_33
482.1
M2_34
481.7
M2_35
479.6
M2_36
478.7
M2_37
478.6
M2_38
478.5
M2_39
478.2
M2_40
478.2
M2_41
475.4
M2_42
475.3
M2_43
474.8
M2_44
470.5
M2_45
470.0
M2_46
469.0
M2_47
468.8
M2_48
467.6
M2_49
466.5
M2_50
463.7
M2_51
463.3
M2_52
463.3
M2_53
462.8
M2_54
462.2
M2_55
461.9
M2_56
458.9
M2_57
456.7
M2_58
456.6
M2_59
456.3
M2_60
454.0
M2_61
452.1
M2_62
450.8
M2_63
450.1
M2_64
449.1
M2_65
449.0
M2_66
448.0
M2_67
443.3
M2_68
442.3
M2_69
440.5
M2_70
439.3
M2_71
438.7
M2_72
437.8
M2_73
436.6
M2_74
433.3
M2_75
431.6
M2_76
430.6
M2_77
429.5
M2_78
428.6
M2_79
427.0
M2_80
422.1
M2_81
413.9
M2_82
413.8
M2_83
411.3
M2_84
409.9
M2_85
405.8
M2_86
402.0
M2_87
392.5
M2_88
390.7
M2_89
381.2
M2_90
376.1
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