MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.3 nTPM
HPA Brain:282.0 nTPM
GTEx:70.3 nTPM
FANTOM5:536.0 Scaled Tags Per Million
Pig:257.8 nTPM
Mouse:145.5 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 282.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 217.0
2411 Female, age 72, unknown 304.2
1830 Male, age 51, unknown 292.6
1833 Male, age 53, unknown 271.7
2019 Male, age 18, unknown 270.2
1870 Female, age 42, unknown 268.4
2219 Male, age 76, both hemispheres 220.0
2828 Female, age 72, unknown 196.0
1827 Male, age 72, unknown 140.7
2666 Male, age 74, left hemisphere 123.1
2586 Male, age 75, left hemisphere 83.1
Dorsal raphe nucleus
nTPM: 167.5
2750 Male, age 76, both hemispheres 333.9
2016 Female, age 72, unknown 167.1
1828 Male, age 53, unknown 155.3
2047 Male, age 72, unknown 98.9
2298 Female, age 72, unknown 82.5
Inferior colliculus
nTPM: 140.5
1848 Female, age 42, unknown 150.4
1890 Male, age 53, unknown 149.9
2849 Male, age 72, unknown 135.1
2097 Female, age 72, unknown 126.7
Median raphe nucleus
nTPM: 163.7
2220 Male, age 76, midline 163.7
Periaquaductal grey, anterior
nTPM: 108.5
1947 Male, age 18, unknown 118.7
2502 Female, age 75, unknown 116.9
1795 Male, age 51, unknown 89.7
Periaquaductal grey, dorsal
nTPM: 94.4
2464 Female, age 72, unknown 160.7
1831 Male, age 72, unknown 102.7
2850 Male, age 76, both hemispheres 63.7
1840 Male, age 53, unknown 50.7
Periaquaductal grey, lateral
nTPM: 115.6
2272 Male, age 74, both hemispheres 155.6
2053 Male, age 18, unknown 123.5
2140 Male, age 76, both hemispheres 67.7
Pretectal area
nTPM: 129.3
2316 Male, age 76, right hemisphere 193.4
1815 Male, age 53, unknown 176.3
2273 Male, age 74, both hemispheres 154.0
1817 Female, age 42, unknown 141.6
2407 Male, age 75, both hemispheres 137.5
2007 Male, age 72, unknown 136.9
2825 Male, age 18, unknown 129.1
2224 Female, age 72, unknown 108.1
2667 Female, age 75, unknown 84.7
1944 Female, age 72, unknown 83.7
1816 Male, age 51, unknown 77.4
Red nucleus
nTPM: 282.0
1865 Male, age 51, unknown 352.4
1821 Female, age 72, unknown 349.1
1904 Male, age 53, unknown 336.9
2823 Male, age 76, right hemisphere 328.1
2227 Male, age 72, unknown 306.5
2769 Male, age 72, unknown 299.5
2785 Male, age 18, unknown 294.1
2503 Female, age 72, unknown 279.2
1954 Female, age 42, unknown 276.3
2725 Female, age 75, unknown 219.5
2588 Male, age 74, left hemisphere 195.8
2584 Male, age 75, left hemisphere 146.4
Substantia nigra
nTPM: 144.2
2590 Female, age 75, unknown 182.0
1889 Female, age 72, unknown 177.5
2583 Male, age 75, right hemisphere 164.1
2409 Female, age 72, unknown 160.4
1851 Male, age 51, unknown 160.2
1941 Male, age 53, unknown 145.7
2699 Male, age 18, unknown 129.0
2241 Male, age 72, unknown 125.1
1916 Female, age 42, unknown 116.5
2665 Male, age 74, both hemispheres 82.0
Superior colliculus
nTPM: 172.0
1913 Female, age 42, unknown 276.4
1995 Male, age 72, unknown 241.4
1895 Male, age 76, right hemisphere 230.6
2587 Male, age 74, left hemisphere 207.4
2668 Female, age 75, unknown 203.9
1839 Male, age 51, unknown 173.5
1796 Male, age 53, unknown 127.1
2087 Female, age 72, unknown 103.5
2261 Male, age 18, unknown 91.3
2664 Male, age 75, both hemispheres 65.1
Ventral tegmental area
nTPM: 207.0
2223 Female, age 72, unknown 353.1
2410 Female, age 72, unknown 251.3
2218 Male, age 76, both hemispheres 197.7
1942 Male, age 51, unknown 158.5
2021 Male, age 53, unknown 147.5
1915 Female, age 42, unknown 134.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.3
Samples: 183

Max nTPM: 370.4
Min nTPM: 3.2
Std nTPM: 52.4
Median nTPM: 55.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 370.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 250.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 248.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 231.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 226.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 221.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 201.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 193.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 174.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 163.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 161.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 536.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 536.0
FF:10158-103A5 76 years, female 536.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 257.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 207.3
Samples: 4

Max nTPM: 377.6
Min nTPM: 117.0
Sample A Female 180.9
Sample B Female 117.0
Sample C Male 153.6
Sample D Male 377.6
Midbrain
nTPM: 257.8
Samples: 4

Max nTPM: 628.1
Min nTPM: 101.0
Sample A Female 628.1
Sample B Female 185.6
Sample C Male 101.0
Sample D Male 116.4
Periaqueductal gray
nTPM: 124.8
Samples: 3

Max nTPM: 159.5
Min nTPM: 80.8
Sample B Female 159.5
Sample C Male 80.8
Sample D Male 134.1
Superior colliculi
nTPM: 149.2
Samples: 4

Max nTPM: 204.1
Min nTPM: 71.4
Sample A Female 163.6
Sample B Female 71.4
Sample C Male 157.6
Sample D Male 204.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 145.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 145.5
Samples: 4

Max nTPM: 171.7
Min nTPM: 117.1
Sample A Male 117.1
Sample B Male 129.1
Sample C Female 163.9
Sample D Female 171.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
655116 Antisense, RP_040922_01_A02, Mouse strain C57BL/6J (56 days, male) 4.3
71608198 Antisense, RP_050927_01_A05, Mouse strain C57BL/6J (56 days, male) 0.6

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