A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2351.7
nTPM
Monaco:
882.8
nTPM
Schmiedel:
233.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2351.7
HPA sample
nTPM
NK-cell nTPM: 2351.8
Samples: 6
Max nTPM: 3036.9
Min nTPM: 1214.1
P10809_1013
2169.8
P10809_1033
2739.7
P10809_1052
2526.6
P10809_1071
2423.4
P10809_1093
1214.1
P10809_1103
3036.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
882.8
Monaco sample
nTPM
NK-cell nTPM: 882.8
Samples: 4
Max nTPM: 952.2
Min nTPM: 786.4
RHH5316_R3683
952.2
RHH5224_R3596
946.2
RHH5253_R3625
846.4
RHH5282_R3654
786.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
233.6
Schmiedel sample id
TPM
NK-cell TPM: 233.6
Samples: 90
Max TPM: 338.6
Min TPM: 188.9
NK_1
338.6
NK_2
310.6
NK_3
298.6
NK_4
294.1
NK_5
283.2
NK_6
274.8
NK_7
273.2
NK_8
267.7
NK_9
265.9
NK_10
262.3
NK_11
256.1
NK_12
255.7
NK_13
254.9
NK_14
254.5
NK_15
253.2
NK_16
252.2
NK_17
251.0
NK_18
250.4
NK_19
249.5
NK_20
249.2
NK_21
249.1
NK_22
247.8
NK_23
247.3
NK_24
245.6
NK_25
245.2
NK_26
245.1
NK_27
244.1
NK_28
244.0
NK_29
242.2
NK_30
241.8
NK_31
241.7
NK_32
240.8
NK_33
240.6
NK_34
240.0
NK_35
239.8
NK_36
239.6
NK_37
238.5
NK_38
236.1
NK_39
235.4
NK_40
234.5
NK_41
234.4
NK_42
234.3
NK_43
233.2
NK_44
233.0
NK_45
232.8
NK_46
231.1
NK_47
230.4
NK_48
228.4
NK_49
227.2
NK_50
225.6
NK_51
225.5
NK_52
224.9
NK_53
224.1
NK_54
223.8
NK_55
223.6
NK_56
223.5
NK_57
223.4
NK_58
223.4
NK_59
221.9
NK_60
221.0
NK_61
220.9
NK_62
220.4
NK_63
217.5
NK_64
216.7
NK_65
215.5
NK_66
213.8
NK_67
213.0
NK_68
213.0
NK_69
212.9
NK_70
212.6
NK_71
212.0
NK_72
211.8
NK_73
211.6
NK_74
211.1
NK_75
210.6
NK_76
210.4
NK_77
208.5
NK_78
208.0
NK_79
206.6
NK_80
206.5
NK_81
204.5
NK_82
202.7
NK_83
202.4
NK_84
202.3
NK_85
200.9
NK_86
200.6
NK_87
200.1
NK_88
192.9
NK_89
192.5
NK_90
188.9
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