A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.6
nTPM
Monaco:
45.4
nTPM
Schmiedel:
33.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.6
HPA sample
nTPM
Memory B-cell nTPM: 2.6
Samples: 6
Max nTPM: 5.7
Min nTPM: 0.1
P10809_1017
2.8
P10809_1025
5.7
P10809_1044
0.1
P10809_1063
2.2
P10809_1092
3.6
P10809_1105
0.9
Naive B-cell nTPM: 4.6
Samples: 6
Max nTPM: 13.7
Min nTPM: 0.8
P10809_1011
0.8
P10809_1029
4.0
P10809_1048
13.7
P10809_1067
3.7
P10809_1091
2.0
P10809_1104
3.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 23.3
Samples: 4
Max nTPM: 37.6
Min nTPM: 14.8
RHH5310_R3677
14.8
RHH5218_R3590
23.9
RHH5247_R3619
16.7
RHH5276_R3648
37.6
Naive B-cell nTPM: 17.2
Samples: 4
Max nTPM: 29.3
Min nTPM: 10.5
RHH5308_R3675
18.3
RHH5216_R3588
10.6
RHH5245_R3617
29.3
RHH5274_R3646
10.5
Non-switched memory B-cell nTPM: 21.8
Samples: 4
Max nTPM: 28.8
Min nTPM: 14.4
RHH5309_R3676
28.8
RHH5217_R3589
15.1
RHH5246_R3618
14.4
RHH5275_R3647
28.8
Plasmablast nTPM: 45.4
Samples: 4
Max nTPM: 62.4
Min nTPM: 37.6
RHH5312_R3679
38.3
RHH5220_R3592
62.4
RHH5249_R3621
37.6
RHH5278_R3650
43.4
Switched memory B-cell nTPM: 18.6
Samples: 4
Max nTPM: 28.2
Min nTPM: 6.6
RHH5311_R3678
11.9
RHH5219_R3591
28.2
RHH5248_R3620
6.6
RHH5277_R3649
27.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.1
Schmiedel sample id
TPM
Naive B-cell TPM: 33.1
Samples: 91
Max TPM: 52.8
Min TPM: 17.6
B_CELL_NAIVE_1
52.8
B_CELL_NAIVE_2
50.6
B_CELL_NAIVE_3
45.6
B_CELL_NAIVE_4
44.2
B_CELL_NAIVE_5
42.4
B_CELL_NAIVE_6
41.6
B_CELL_NAIVE_7
40.9
B_CELL_NAIVE_8
40.8
B_CELL_NAIVE_9
40.8
B_CELL_NAIVE_10
40.2
B_CELL_NAIVE_11
40.1
B_CELL_NAIVE_12
39.8
B_CELL_NAIVE_13
38.8
B_CELL_NAIVE_14
38.5
B_CELL_NAIVE_15
38.2
B_CELL_NAIVE_16
37.9
B_CELL_NAIVE_17
37.3
B_CELL_NAIVE_18
37.3
B_CELL_NAIVE_19
36.6
B_CELL_NAIVE_20
36.6
B_CELL_NAIVE_21
36.5
B_CELL_NAIVE_22
36.5
B_CELL_NAIVE_23
36.3
B_CELL_NAIVE_24
36.3
B_CELL_NAIVE_25
36.2
B_CELL_NAIVE_26
36.2
B_CELL_NAIVE_27
36.1
B_CELL_NAIVE_28
35.9
B_CELL_NAIVE_29
35.9
B_CELL_NAIVE_30
35.8
B_CELL_NAIVE_31
35.7
B_CELL_NAIVE_32
35.5
B_CELL_NAIVE_33
35.3
B_CELL_NAIVE_34
35.2
B_CELL_NAIVE_35
35.2
B_CELL_NAIVE_36
34.9
B_CELL_NAIVE_37
34.7
B_CELL_NAIVE_38
34.6
B_CELL_NAIVE_39
34.4
B_CELL_NAIVE_40
34.4
B_CELL_NAIVE_41
34.2
B_CELL_NAIVE_42
33.8
B_CELL_NAIVE_43
33.8
B_CELL_NAIVE_44
33.6
B_CELL_NAIVE_45
33.6
B_CELL_NAIVE_46
33.6
B_CELL_NAIVE_47
33.4
B_CELL_NAIVE_48
33.1
B_CELL_NAIVE_49
33.1
B_CELL_NAIVE_50
33.0
B_CELL_NAIVE_51
32.9
B_CELL_NAIVE_52
32.8
B_CELL_NAIVE_53
32.6
B_CELL_NAIVE_54
32.5
B_CELL_NAIVE_55
32.1
B_CELL_NAIVE_56
32.0
B_CELL_NAIVE_57
31.5
B_CELL_NAIVE_58
31.4
B_CELL_NAIVE_59
31.1
B_CELL_NAIVE_60
31.1
B_CELL_NAIVE_61
31.0
B_CELL_NAIVE_62
30.8
B_CELL_NAIVE_63
30.2
B_CELL_NAIVE_64
30.2
B_CELL_NAIVE_65
29.8
B_CELL_NAIVE_66
29.5
B_CELL_NAIVE_67
29.3
B_CELL_NAIVE_68
29.3
B_CELL_NAIVE_69
29.3
B_CELL_NAIVE_70
28.9
B_CELL_NAIVE_71
28.7
B_CELL_NAIVE_72
28.6
B_CELL_NAIVE_73
28.5
B_CELL_NAIVE_74
28.5
B_CELL_NAIVE_75
28.1
B_CELL_NAIVE_76
27.5
B_CELL_NAIVE_77
27.1
B_CELL_NAIVE_78
27.0
B_CELL_NAIVE_79
26.9
B_CELL_NAIVE_80
26.0
B_CELL_NAIVE_81
25.9
B_CELL_NAIVE_82
25.6
B_CELL_NAIVE_83
25.0
B_CELL_NAIVE_84
23.5
B_CELL_NAIVE_85
23.5
B_CELL_NAIVE_86
22.9
B_CELL_NAIVE_87
22.4
B_CELL_NAIVE_88
21.1
B_CELL_NAIVE_89
20.9
B_CELL_NAIVE_90
18.1
B_CELL_NAIVE_91
17.6
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