A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.9
nTPM
Monaco:
28.1
nTPM
Schmiedel:
64.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.9
HPA sample
nTPM
NK-cell nTPM: 2.9
Samples: 6
Max nTPM: 7.1
Min nTPM: 0.0
P10809_1013
2.8
P10809_1033
3.6
P10809_1052
3.6
P10809_1071
7.1
P10809_1093
0.0
P10809_1103
0.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.1
Monaco sample
nTPM
NK-cell nTPM: 28.1
Samples: 4
Max nTPM: 34.5
Min nTPM: 17.1
RHH5316_R3683
29.4
RHH5224_R3596
31.4
RHH5253_R3625
34.5
RHH5282_R3654
17.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.0
Schmiedel sample id
TPM
NK-cell TPM: 64.0
Samples: 90
Max TPM: 89.0
Min TPM: 37.3
NK_1
89.0
NK_2
87.8
NK_3
86.3
NK_4
86.0
NK_5
85.7
NK_6
80.2
NK_7
79.5
NK_8
79.3
NK_9
78.0
NK_10
77.5
NK_11
76.1
NK_12
75.7
NK_13
75.4
NK_14
75.3
NK_15
74.2
NK_16
73.8
NK_17
73.7
NK_18
73.6
NK_19
73.1
NK_20
72.0
NK_21
71.6
NK_22
71.5
NK_23
71.3
NK_24
70.6
NK_25
69.9
NK_26
69.6
NK_27
69.1
NK_28
68.8
NK_29
68.8
NK_30
68.0
NK_31
67.9
NK_32
67.9
NK_33
67.3
NK_34
67.2
NK_35
67.0
NK_36
66.7
NK_37
66.6
NK_38
66.3
NK_39
65.6
NK_40
65.3
NK_41
65.2
NK_42
64.7
NK_43
64.1
NK_44
64.1
NK_45
64.0
NK_46
63.4
NK_47
63.3
NK_48
63.1
NK_49
63.1
NK_50
62.5
NK_51
62.2
NK_52
61.9
NK_53
61.8
NK_54
61.7
NK_55
60.5
NK_56
60.1
NK_57
60.0
NK_58
59.7
NK_59
59.5
NK_60
59.4
NK_61
59.2
NK_62
58.7
NK_63
58.6
NK_64
58.1
NK_65
57.8
NK_66
57.3
NK_67
57.0
NK_68
56.6
NK_69
56.0
NK_70
55.7
NK_71
55.6
NK_72
55.0
NK_73
54.9
NK_74
54.9
NK_75
54.2
NK_76
53.7
NK_77
53.3
NK_78
53.0
NK_79
51.0
NK_80
50.3
NK_81
50.2
NK_82
49.8
NK_83
49.3
NK_84
49.2
NK_85
48.2
NK_86
47.0
NK_87
46.1
NK_88
44.8
NK_89
41.4
NK_90
37.3
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