A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.0
nTPM
Monaco:
106.9
nTPM
Schmiedel:
201.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.0
HPA sample
nTPM
Classical monocyte nTPM: 14.9
Samples: 6
Max nTPM: 23.1
Min nTPM: 9.8
P10809_1003
10.3
P10809_1020
18.7
P10809_1039
23.1
P10809_1058
13.4
P10809_1080
9.8
P10809_1107
14.3
Intermediate monocyte nTPM: 25.9
Samples: 6
Max nTPM: 35.2
Min nTPM: 11.1
P10809_1004
35.2
P10809_1023
32.8
P10809_1042
23.0
P10809_1061
28.5
P10809_1081
11.1
P10809_1108
24.7
Non-classical monocyte nTPM: 30.0
Samples: 5
Max nTPM: 38.8
Min nTPM: 16.5
P10809_1005
38.8
P10809_1053
33.4
P10809_1072
32.4
P10809_1082
16.5
P10809_1109
29.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.9
Monaco sample
nTPM
Classical monocyte nTPM: 84.5
Samples: 4
Max nTPM: 106.3
Min nTPM: 56.8
RHH5313_R3680
97.7
RHH5221_R3593
77.3
RHH5250_R3622
106.3
RHH5279_R3651
56.8
Intermediate monocyte nTPM: 104.6
Samples: 4
Max nTPM: 159.9
Min nTPM: 64.5
RHH5314_R3681
101.7
RHH5222_R3594
64.5
RHH5251_R3623
159.9
RHH5280_R3652
92.3
Non-classical monocyte nTPM: 107.0
Samples: 4
Max nTPM: 175.8
Min nTPM: 51.1
RHH5315_R3682
139.3
RHH5223_R3595
61.7
RHH5252_R3624
175.8
RHH5281_R3653
51.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
201.7
Schmiedel sample id
TPM
Classical monocyte TPM: 129.9
Samples: 91
Max TPM: 178.2
Min TPM: 80.9
MONOCYTES_1
178.2
MONOCYTES_2
170.7
MONOCYTES_3
165.0
MONOCYTES_4
163.7
MONOCYTES_5
161.3
MONOCYTES_6
159.7
MONOCYTES_7
159.3
MONOCYTES_8
158.3
MONOCYTES_9
157.4
MONOCYTES_10
156.6
MONOCYTES_11
155.1
MONOCYTES_12
154.0
MONOCYTES_13
150.5
MONOCYTES_14
150.2
MONOCYTES_15
148.0
MONOCYTES_16
147.6
MONOCYTES_17
147.4
MONOCYTES_18
146.5
MONOCYTES_19
146.3
MONOCYTES_20
145.2
MONOCYTES_21
145.1
MONOCYTES_22
145.0
MONOCYTES_23
144.6
MONOCYTES_24
144.4
MONOCYTES_25
144.0
MONOCYTES_26
142.7
MONOCYTES_27
142.2
MONOCYTES_28
141.2
MONOCYTES_29
141.0
MONOCYTES_30
140.8
MONOCYTES_31
140.3
MONOCYTES_32
139.3
MONOCYTES_33
138.9
MONOCYTES_34
138.7
MONOCYTES_35
138.5
MONOCYTES_36
138.1
MONOCYTES_37
137.8
MONOCYTES_38
137.1
MONOCYTES_39
135.6
MONOCYTES_40
135.2
MONOCYTES_41
134.2
MONOCYTES_42
134.1
MONOCYTES_43
133.3
MONOCYTES_44
132.8
MONOCYTES_45
132.8
MONOCYTES_46
132.1
MONOCYTES_47
131.5
MONOCYTES_48
130.6
MONOCYTES_49
129.9
MONOCYTES_50
129.3
MONOCYTES_51
128.8
MONOCYTES_52
128.7
MONOCYTES_53
127.9
MONOCYTES_54
127.8
MONOCYTES_55
126.0
MONOCYTES_56
125.7
MONOCYTES_57
124.4
MONOCYTES_58
124.2
MONOCYTES_59
123.7
MONOCYTES_60
122.5
MONOCYTES_61
122.5
MONOCYTES_62
122.0
MONOCYTES_63
121.8
MONOCYTES_64
121.6
MONOCYTES_65
121.5
MONOCYTES_66
121.0
MONOCYTES_67
119.7
MONOCYTES_68
118.5
MONOCYTES_69
118.5
MONOCYTES_70
117.4
MONOCYTES_71
115.0
MONOCYTES_72
112.5
MONOCYTES_73
111.9
MONOCYTES_74
109.9
MONOCYTES_75
107.4
MONOCYTES_76
106.5
MONOCYTES_77
104.8
MONOCYTES_78
104.4
MONOCYTES_79
103.8
MONOCYTES_80
103.7
MONOCYTES_81
103.0
MONOCYTES_82
102.0
MONOCYTES_83
101.9
MONOCYTES_84
98.6
MONOCYTES_85
98.0
MONOCYTES_86
90.5
MONOCYTES_87
90.0
MONOCYTES_88
88.0
MONOCYTES_89
86.9
MONOCYTES_90
84.5
MONOCYTES_91
80.9
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Non-classical monocyte TPM: 201.7
Samples: 90
Max TPM: 339.5
Min TPM: 104.7
M2_1
339.5
M2_2
328.1
M2_3
295.8
M2_4
293.6
M2_5
289.5
M2_6
289.3
M2_7
275.1
M2_8
270.7
M2_9
269.3
M2_10
265.2
M2_11
264.0
M2_12
260.1
M2_13
258.0
M2_14
245.7
M2_15
243.4
M2_16
239.7
M2_17
237.9
M2_18
237.2
M2_19
236.0
M2_20
234.7
M2_21
231.4
M2_22
230.9
M2_23
230.1
M2_24
228.3
M2_25
226.5
M2_26
224.7
M2_27
224.4
M2_28
222.2
M2_29
221.9
M2_30
221.2
M2_31
218.6
M2_32
217.9
M2_33
215.0
M2_34
213.7
M2_35
213.1
M2_36
212.6
M2_37
212.0
M2_38
211.0
M2_39
207.3
M2_40
206.7
M2_41
205.7
M2_42
204.7
M2_43
202.8
M2_44
201.2
M2_45
200.5
M2_46
200.4
M2_47
199.1
M2_48
198.7
M2_49
196.4
M2_50
196.4
M2_51
195.6
M2_52
194.8
M2_53
194.5
M2_54
194.0
M2_55
193.5
M2_56
192.5
M2_57
189.1
M2_58
188.9
M2_59
188.5
M2_60
186.7
M2_61
185.6
M2_62
184.1
M2_63
182.1
M2_64
180.2
M2_65
173.9
M2_66
172.4
M2_67
169.4
M2_68
167.7
M2_69
166.6
M2_70
163.3
M2_71
156.9
M2_72
155.6
M2_73
155.5
M2_74
152.3
M2_75
150.7
M2_76
148.9
M2_77
148.5
M2_78
145.7
M2_79
137.9
M2_80
137.6
M2_81
137.4
M2_82
137.3
M2_83
134.6
M2_84
124.6
M2_85
123.3
M2_86
121.6
M2_87
120.3
M2_88
115.5
M2_89
110.1
M2_90
104.7
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